CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d030086_P001	Maize	plastid	80.23	83.13
TraesCS1A01G194200.1	Wheat	plastid	56.98	62.29
TraesCS1B01G209200.1	Wheat	plastid	55.43	60.34
Os10t0576600-01	Rice	plastid	51.94	59.03
GSMUA_Achr5P03500_001	Banana	plastid	38.37	39.76
GSMUA_Achr4P27320_001	Banana	plastid	39.92	38.87
Bra013269.1-P	Field mustard	mitochondrion	32.56	36.68
CDX78813	Canola	mitochondrion	31.4	35.37
HORVU1Hr1G050780.2	Barley	plastid	51.16	34.65
CDY44501	Canola	mitochondrion	31.78	33.74
KRH39558	Soybean	plastid	32.95	33.6
VIT_02s0012g01590.t01	Wine grape	nucleus	27.91	33.49
CDY08881	Canola	plastid	31.01	30.77
AT4G17940.1	Thale cress	mitochondrion	32.56	30.66
CDX76550	Canola	plastid	31.01	30.42
Bra021028.1-P	Field mustard	plastid	31.01	30.42
Solyc08g076730.2.1	Tomato	plastid	35.27	30.13
PGSC0003DMT400045174	Potato	plastid	34.11	29.14
KRH74400	Soybean	nucleus, plastid	32.56	28.87
EER88623	Sorghum	mitochondrion	32.17	25.94
EER92881	Sorghum	plastid	29.46	22.42
EES12482	Sorghum	nucleus	26.74	20.91
EER93981	Sorghum	plastid	18.6	12.97
EES01775	Sorghum	plastid	20.16	9.81
KXG22120	Sorghum	plastid	19.38	9.8

Protein Annotations

EnsemblPlants:EER91874	EnsemblPlantsGene:SORBI_3001G286000	EntrezGene:8055595	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR011990	InterPro:IPR013026	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR26312
PANTHER:PTHR26312:SF53	PFscan:PS50293	ProteinID:EER91874	ProteinID:EER91874.1	RefSeq:XP_002464876.1	SEG:seg
SUPFAM:SSF48452	unigene:Sbi.14788	UniParc:UPI0001A823C8	UniProt:C5WQQ9	MapMan:35.2	:

Description

hypothetical protein

Coordinates

chr1:+:56029131..56030835

Molecular Weight (calculated)

27144.5 Da

IEP (calculated)

4.916

GRAVY (calculated)

-0.390

Length

258 amino acids

Sequence
(BLAST)

001: MEAAGATSSR LARSASLSAA RPHHRSRVAR FPPSPQLTSL SAAAASPRAL PLRRTRSDAE LAYVARSAAV VVLRHAPIPA ILEADEEERD SKAPAGVDGA
101: GRNGGGSGGG GGGGGGQGQG SGCDMGEYYR RVLRVDPGNP LLLRNYGKYL HEVERDLSGA EGCYARALLA CPGDADLLSL YGRVIWEARQ EKDRAADYFE
201: RAVQAAPDDC YVLGSYASFL WDADDDEEEV GTRAADVKEE TTSTVVASCD SPSLMPAC

Best Arabidopsis Sequence Match ( AT4G17940.1 )
(BLAST)

001: MKSLLMRTGS MPVLQNRLIS GGSSRKMTPI SRTNSVESLS SYGERFAGGK ISIEVKANVG MRRVLSESDV IRSERMLKRV GSKPSPARIP EDDEAGEEEI
101: RFADGWGSMI SGGLPVEEKC FTGGGVGGGS GYSGGYGNGG GGGYEDKSKI GDYYREMLRS NPNNSLLLMN YGKFLYEVEK DAEGAEEYYG RAILENPGDG
201: EALSMYGRLI WETKRDEKRA QGYFDQAVNA SPNDCMVLGS YARFMWEAED DDDDDEEEEE EEWMAASPLM VSAV

Arabidopsis Description

Tetratricopeptide repeat (TPR)-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q0WUZ1]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.