Factsheet for TraesCS1B01G209200.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G194200.1	Wheat	plastid	94.94	95.34
Zm00001d030086_P001	Maize	plastid	61.6	58.63
Os10t0576600-01	Rice	plastid	55.7	58.15
EER91874	Sorghum	plastid	60.34	55.43
HORVU1Hr1G050780.2	Barley	plastid	82.7	51.44
GSMUA_Achr5P03500_001	Banana	plastid	46.41	44.18
Bra013269.1-P	Field mustard	mitochondrion	40.08	41.48
CDX78813	Canola	mitochondrion	39.66	41.05
GSMUA_Achr4P27320_001	Banana	plastid	45.57	40.75
CDY44501	Canola	mitochondrion	37.55	36.63
VIT_02s0012g01590.t01	Wine grape	nucleus	31.65	34.88
KRH39558	Soybean	plastid	37.13	34.78
AT4G17940.1	Thale cress	mitochondrion	38.82	33.58
CDY08881	Canola	plastid	36.71	33.46
CDX76550	Canola	plastid	37.13	33.46
Bra021028.1-P	Field mustard	plastid	37.13	33.46
Solyc08g076730.2.1	Tomato	plastid	40.08	31.46
PGSC0003DMT400045174	Potato	plastid	39.66	31.13
KRH74400	Soybean	nucleus, plastid	36.71	29.9
TraesCS7B01G279400.1	Wheat	mitochondrion	35.87	29.01
TraesCS4B01G342900.1	Wheat	mitochondrion	30.8	23.17
TraesCS1B01G191700.1	Wheat	plastid	20.68	14.2
TraesCS3B01G400100.1	Wheat	plastid	25.32	12.53
TraesCS1B01G287500.1	Wheat	plastid	23.21	11.48

Protein Annotations

EnsemblPlants:TraesCS1B01G209200.1	EnsemblPlantsGene:TraesCS1B01G209200	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR011990	InterPro:IPR013026	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR26312	PANTHER:PTHR26312:SF53
PFscan:PS50293	SEG:seg	SUPFAM:SSF48452	MapMan:35.2	:	:

Description

No Description!

Coordinates

chr1B:-:378944233..378945045

Molecular Weight (calculated)

25055.0 Da

IEP (calculated)

4.772

GRAVY (calculated)

-0.518

Length

237 amino acids

Sequence
(BLAST)

001: MEATSSLTRS LSLVPRPRRS SRAAKSPHMP TLSPAPRVLP LRRARSDADL LGSVPAAAPG SAGSVLLRSP RPGTLGERDD APMEDCFDGS GAGKDNNSSG
101: RGGGSGGAGG NGQSAGMGEH YRRVLRLEPD NPLLLRNYGK YLHEVERDLA GAEEYYGRAL LACPGDADLL SLYGRVLWEA NQDKERASGY FERAVQAAPD
201: DCYVLGSYAS FLWDAEDEDE EEASTAAASS PALVPAC

Best Arabidopsis Sequence Match ( AT4G17940.1 )
(BLAST)

001: MKSLLMRTGS MPVLQNRLIS GGSSRKMTPI SRTNSVESLS SYGERFAGGK ISIEVKANVG MRRVLSESDV IRSERMLKRV GSKPSPARIP EDDEAGEEEI
101: RFADGWGSMI SGGLPVEEKC FTGGGVGGGS GYSGGYGNGG GGGYEDKSKI GDYYREMLRS NPNNSLLLMN YGKFLYEVEK DAEGAEEYYG RAILENPGDG
201: EALSMYGRLI WETKRDEKRA QGYFDQAVNA SPNDCMVLGS YARFMWEAED DDDDDEEEEE EEWMAASPLM VSAV

Arabidopsis Description

Tetratricopeptide repeat (TPR)-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q0WUZ1]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.