Factsheet for TraesCS1B01G287500.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G277900.1	Wheat	plastid	93.95	94.94
TraesCS1A01G278600.1	Wheat	plastid	91.65	93.4
HORVU1Hr1G073460.2	Barley	plastid	88.94	83.2
Os05t0447700-01	Rice	plastid	77.87	77.07
KXG22120	Sorghum	plastid	72.65	68.24
Zm00001d038274_P002	Maize	plastid	70.98	67.73
Zm00001d010075_P001	Maize	plastid	68.68	62.67
TraesCS3B01G400100.1	Wheat	plastid	62.21	62.21
CDY02002	Canola	cytosol, mitochondrion, nucleus	16.91	53.29
GSMUA_Achr9P03650_001	Banana	plastid	48.02	45.36
GSMUA_Achr8P02280_001	Banana	plastid	46.97	45.0
GSMUA_Achr6P33690_001	Banana	plastid	47.6	42.7
GSMUA_Achr11P...	Banana	plastid	44.47	42.69
CDY51354	Canola	plastid	41.75	41.49
VIT_06s0004g06290.t01	Wine grape	plastid	45.51	41.21
Bra039995.1-P	Field mustard	plastid	41.75	41.15
Bra018368.1-P	Field mustard	plastid	40.08	41.11
KRG98335	Soybean	plastid	45.51	40.98
CDX97868	Canola	plastid	42.8	40.84
KRH46437	Soybean	plastid	44.05	40.19
AT2G29670.2	Thale cress	plastid	43.84	39.18
Bra015570.1-P	Field mustard	plastid	41.54	38.72
CDY06694	Canola	plastid	41.34	38.52
CDY10264	Canola	plastid	41.54	38.49
Bra031567.1-P	Field mustard	plastid	39.25	37.98
CDY06247	Canola	plastid	39.25	37.98
Solyc06g076850.2.1	Tomato	plastid	43.63	37.93
PGSC0003DMT400078227	Potato	plastid	43.42	37.61
CDY09927	Canola	plastid	38.0	36.77
AT1G07280.1	Thale cress	plastid	41.54	36.05
GSMUA_Achr5P28840_001	Banana	cytosol	41.13	35.12
CDX99068	Canola	plastid	33.19	34.72
Bra018168.1-P	Field mustard	plastid	33.19	34.72
CDX86126	Canola	plastid	34.45	33.95
AT3G47080.1	Thale cress	plastid	35.7	33.2
Bra019495.1-P	Field mustard	plastid	31.73	32.83
CDY58299	Canola	plastid	32.78	32.37
CDY38075	Canola	plastid	27.97	31.6
TraesCS1B01G191700.1	Wheat	plastid	16.91	23.48
TraesCS1B01G209200.1	Wheat	plastid	11.48	23.21
TraesCS4B01G342900.1	Wheat	mitochondrion	14.4	21.9
TraesCS7B01G279400.1	Wheat	mitochondrion	13.36	21.84

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.2	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0006139	GO:GO:0006396	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	InterPro:HAT
InterPro:IPR011990	InterPro:IPR013026	PFAM:PF14559	PFscan:PS50293	PANTHER:PTHR26312	PANTHER:PTHR26312:SF83
SMART:SM00386	SUPFAM:SSF48452	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	EnsemblPlantsGene:TraesCS1B01G287500	EnsemblPlants:TraesCS1B01G287500.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr1B:-:499592096..499593638

Molecular Weight (calculated)

51009.9 Da

IEP (calculated)

4.946

GRAVY (calculated)

-0.214

Length

479 amino acids

Sequence
(BLAST)

001: MGFQVAAVVP SPCPPSTSSR SPFLGGGGGC GMLARSWAPG GLVSRRRGEG RPARCALSAS IDGVGGGDME FLRRIEELAA SAGVRTAGCG WPPSLEQSAS
101: SVGLPLSLRI LKRKKQQRRQ QVPPRSRWDE RLSLGSAGES VGRAFSSMVL IVRELQSFAL QQMLCDDLQA VLARAHGEMQ DSFVWLFQHI FAGTPALMLS
201: LMLLLANFTV HSMSNSVAAA AVAPTPPAAP AATVVDTQHT EPSNPRFDAA SVKTFSAGRT ASVGGGSGGG GDVRPVAGAS GDDRGDESRY SLSRVAPQQL
301: TPLAGTGVEN VVPGAAAVDE QAIWERMVAE ASSMQADARA DELTDPDVLG NLVAPVEAEI ETEDVGEYAR TEQRYKLAVS EEPNNSLILA NFAQFLYITR
401: KDHKRAEHYF ERAVRAEPTD AEALSRYATF LWKARDDVEA AEETYQEAIA ADPGNAHYAA AYAHFLWNTG GEDTCFPLD

Best Arabidopsis Sequence Match ( AT2G29670.2 )
(BLAST)

001: MGVKVASSST FLQWTTQPII HQSSSPSQTL ASGTITSPSK RRSTVHDGRF LSCRFVTQRL NRSALFGTPS TKLHRPKSCE LWKSSSSSSR PIKTQSFRRV
101: YSANLDPFSD EEFSKKIQEL TLRFNIPHHD DDENSIEPPW NEMVHLSSIE MKANSVDLPL SLRIIKKKRQ WEEGVKQAGE SACCSMNKAF SSMVFMIREL
201: QSFTLHMREI LFYEDLQEIL LRVREEMQQS FVWLFQQVFS ATPTLMVYVM ILLANFTVYS IGNNSSALAA VAPLPPTITE LTTVSETEET NVKFDSSVVK
301: TFFVSSPSGS IASVGGNNNG GGGNVKPVLS GTDGDGSDGS EQFRTIIPEG VSQLSSSNFG SEPSVSGQDE HRLWNSMVEE AERMQYSNID DSLDQETRKR
401: FVSHVEARVE AEEDTGYFKT ELMYQTELSQ EPNNPLLLAN YAQFLYLVSN DHDRAEEYFK RAVGVEPKDA EAFSKYATFL WRARDDLWAA EETFLEAIDA
501: DPTNSYYAAN YANFLWNTGG DDTCFPLDDE SHEDTI

Arabidopsis Description

At2g29670/T27A16.23 [Source:UniProtKB/TrEMBL;Acc:O82388]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.