Factsheet for GSMUA_Achr11P24210_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 1
nucleus 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P03650_001	Banana	plastid	67.33	66.27
GSMUA_Achr8P02280_001	Banana	plastid	66.33	66.2
GSMUA_Achr6P33690_001	Banana	plastid	64.13	59.93
CDY02002	Canola	cytosol, mitochondrion, nucleus	17.03	55.92
GSMUA_Achr5P28840_001	Banana	cytosol	59.72	53.12
HORVU3Hr1G084970.2	Barley	plastid	45.29	46.79
TraesCS3B01G400100.1	Wheat	plastid	44.49	46.35
Os05t0447700-01	Rice	plastid	44.89	46.28
TraesCS3D01G361500.1	Wheat	plastid	44.29	46.04
Os01t0855200-01	Rice	plastid	47.09	45.9
TraesCS1D01G277900.1	Wheat	plastid	43.29	45.57
VIT_06s0004g06290.t01	Wine grape	plastid	48.3	45.56
Zm00001d012325_P001	Maize	plastid	46.89	45.35
TraesCS3A01G368600.1	Wheat	plastid	43.69	45.32
TraesCS1A01G278600.1	Wheat	plastid	41.88	44.47
TraesCS1B01G287500.1	Wheat	plastid	42.69	44.47
Zm00001d042812_P001	Maize	plastid	46.29	44.17
EES01775	Sorghum	plastid	46.49	43.77
KRG98335	Soybean	plastid	46.29	43.42
KRH46437	Soybean	plastid	45.49	43.24
Solyc06g076850.2.1	Tomato	plastid	47.7	43.19
KXG22120	Sorghum	plastid	43.89	42.94
Zm00001d038274_P002	Maize	plastid	42.89	42.63
CDY51354	Canola	plastid	41.08	42.53
Bra018368.1-P	Field mustard	plastid	39.68	42.4
Bra039995.1-P	Field mustard	plastid	41.28	42.39
PGSC0003DMT400078227	Potato	plastid	46.89	42.31
CDX97868	Canola	plastid	42.28	42.03
Zm00001d010075_P001	Maize	plastid	43.89	41.71
AT2G29670.2	Thale cress	plastid	44.69	41.6
HORVU1Hr1G073460.2	Barley	plastid	42.28	41.21
Bra015570.1-P	Field mustard	plastid	42.08	40.86
CDY06694	Canola	plastid	41.88	40.66
CDY10264	Canola	plastid	42.08	40.62
Bra031567.1-P	Field mustard	plastid	39.88	40.2
CDY06247	Canola	plastid	39.88	40.2
CDY09927	Canola	plastid	39.08	39.39
AT1G07280.1	Thale cress	plastid	42.28	38.22
CDX99068	Canola	plastid	33.47	36.46
Bra018168.1-P	Field mustard	plastid	33.47	36.46
CDY38075	Canola	plastid	29.46	34.67
CDX86126	Canola	plastid	33.67	34.57
AT3G47080.1	Thale cress	plastid	35.47	34.37
Bra019495.1-P	Field mustard	plastid	31.66	34.13
CDY58299	Canola	plastid	32.87	33.81
GSMUA_Achr2P15930_001	Banana	cytosol	7.62	31.67
GSMUA_Achr5P03500_001	Banana	plastid	12.83	25.7
GSMUA_Achr4P27320_001	Banana	plastid	13.23	24.91
GSMUA_Achr1P01000_001	Banana	plastid	12.83	23.62
GSMUA_Achr5P15660_001	Banana	plastid	11.42	19.66

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.2	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
EnsemblPlantsGene:GSMUA_Achr11G24210_001	EnsemblPlants:GSMUA_Achr11P24210_001	EnsemblPlants:GSMUA_Achr11T24210_001	InterPro:IPR011990	InterPro:IPR013026	UniProt:M0RV01
PFscan:PS50293	PANTHER:PTHR26312	PANTHER:PTHR26312:SF83	SUPFAM:SSF48452	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf
UniParc:UPI0002951E55	SEG:seg	:	:	:	:

Description

Putative expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr11G24210_001]

Coordinates

chr11:-:23854960..23857214

Molecular Weight (calculated)

55862.2 Da

IEP (calculated)

4.840

GRAVY (calculated)

-0.415

Length

499 amino acids

Sequence
(BLAST)

001: MAVQTAETCF QWSRMSRANS LTPSPAAFPA AGPSLGCRKR QGSAVHVRDR VLASPFLGAV SAKLLRVRLL DIRRRRGEKR ALRRAFSSSL QRFEAEGDDY
101: QEENDELFIQ KPQEFAIELQ QQRGGGYEEG IEEAAFVSPA SSSDSSPSSF SLSRKKRWED GWFREASESA FCSVNRAFSS MVFMIRELQS YTLQMREFIS
201: SDDLQGILAR VQREMNSSFV WLFQQIFSCT PTLMVSVMLL LANFTVYSMG HLDASAMAAP NPPAQSLVET TVVVEDRRHL NHHDRSSIKT FSSIGRTASI
301: GGSGPGGGGK AKPVSGATGD GRSDDERFSA EEEVRVWRGI LEEVSRLQAS TRDEALMDQE TLWRLVSPVT AEPEPDDYSE YLRTEIMYQQ TLSQDPENAL
401: LVANFAQFLY LVLHDHDRAE YYFKRAAGLE PADAEALSQY ASFLWLARKD MAAAEETYLQ AIAADPSNPF HTANYAHFLW STGAEDTCYP LDTDDAWQQ

Best Arabidopsis Sequence Match ( AT2G29670.2 )
(BLAST)

001: MGVKVASSST FLQWTTQPII HQSSSPSQTL ASGTITSPSK RRSTVHDGRF LSCRFVTQRL NRSALFGTPS TKLHRPKSCE LWKSSSSSSR PIKTQSFRRV
101: YSANLDPFSD EEFSKKIQEL TLRFNIPHHD DDENSIEPPW NEMVHLSSIE MKANSVDLPL SLRIIKKKRQ WEEGVKQAGE SACCSMNKAF SSMVFMIREL
201: QSFTLHMREI LFYEDLQEIL LRVREEMQQS FVWLFQQVFS ATPTLMVYVM ILLANFTVYS IGNNSSALAA VAPLPPTITE LTTVSETEET NVKFDSSVVK
301: TFFVSSPSGS IASVGGNNNG GGGNVKPVLS GTDGDGSDGS EQFRTIIPEG VSQLSSSNFG SEPSVSGQDE HRLWNSMVEE AERMQYSNID DSLDQETRKR
401: FVSHVEARVE AEEDTGYFKT ELMYQTELSQ EPNNPLLLAN YAQFLYLVSN DHDRAEEYFK RAVGVEPKDA EAFSKYATFL WRARDDLWAA EETFLEAIDA
501: DPTNSYYAAN YANFLWNTGG DDTCFPLDDE SHEDTI

Arabidopsis Description

At2g29670/T27A16.23 [Source:UniProtKB/TrEMBL;Acc:O82388]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.