Factsheet for GSMUA_Achr5P03500_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 2
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P27320_001	Banana	plastid	74.3	69.81
GSMUA_Achr2P15930_001	Banana	cytosol	23.69	49.17
Os10t0576600-01	Rice	plastid	42.57	46.7
TraesCS1A01G194200.1	Wheat	plastid	44.18	46.61
TraesCS1B01G209200.1	Wheat	plastid	44.18	46.41
Bra013269.1-P	Field mustard	mitochondrion	41.77	45.41
VIT_02s0012g01590.t01	Wine grape	nucleus	38.55	44.65
CDX78813	Canola	mitochondrion	40.96	44.54
CDY44501	Canola	mitochondrion	41.37	42.39
Bra021028.1-P	Field mustard	plastid	42.57	40.3
Zm00001d030086_P001	Maize	plastid	40.16	40.16
CDX76550	Canola	plastid	42.17	39.92
CDY08881	Canola	plastid	40.96	39.23
KRH39558	Soybean	plastid	39.76	39.13
EER91874	Sorghum	plastid	39.76	38.37
AT4G17940.1	Thale cress	mitochondrion	40.56	36.86
PGSC0003DMT400045174	Potato	plastid	44.18	36.42
Solyc08g076730.2.1	Tomato	plastid	42.97	35.43
KRH74400	Soybean	nucleus, plastid	40.56	34.71
GSMUA_Achr1P01000_001	Banana	plastid	32.93	30.26
GSMUA_Achr5P15660_001	Banana	plastid	28.92	24.83
HORVU1Hr1G050780.2	Barley	plastid	37.75	24.67
GSMUA_Achr11P...	Banana	plastid	25.7	12.83
GSMUA_Achr9P03650_001	Banana	plastid	24.9	12.23
GSMUA_Achr8P02280_001	Banana	plastid	24.1	12.0
GSMUA_Achr6P33690_001	Banana	plastid	24.9	11.61
GSMUA_Achr5P28840_001	Banana	cytosol	21.29	9.45

Protein Annotations

EnsemblPlants:GSMUA_Achr5P03500_001	EnsemblPlants:GSMUA_Achr5T03500_001	EnsemblPlantsGene:GSMUA_Achr5G03500_001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR011990	InterPro:IPR013026	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR26312
PANTHER:PTHR26312:SF53	PFscan:PS50293	SEG:seg	SUPFAM:SSF48452	UniParc:UPI0002964866	UniProt:M0SVC9
MapMan:35.2	:	:	:	:	:

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr5G03500_001]

Coordinates

chr5:+:2398723..2399691

Molecular Weight (calculated)

26989.7 Da

IEP (calculated)

6.259

GRAVY (calculated)

-0.458

Length

249 amino acids

Sequence
(BLAST)

001: MTAAILTRSC SFLGEPGRYG DSAAGISFLR RNRSGLLLPP RSRCAAALHY EAEVGREGRL LRRVRSEGDL IPSNRPGQVE LQANRFDIGV AVPAIPPVEQ
101: VACSGGGIGK GRKVGGGRGG GGGGDQNHNR RIAEHYQRML RSDPSSALLL RNYGRFLHEV EGDAKGAEEY YGRAILASPG DGEVLSLYGK LVWETHRDGE
201: RAEAYFERAV EASPDDCFVL GSYAHFLWDA EEEEEKGTIQ VSSPLAEAF

Best Arabidopsis Sequence Match ( AT4G17940.1 )
(BLAST)

001: MKSLLMRTGS MPVLQNRLIS GGSSRKMTPI SRTNSVESLS SYGERFAGGK ISIEVKANVG MRRVLSESDV IRSERMLKRV GSKPSPARIP EDDEAGEEEI
101: RFADGWGSMI SGGLPVEEKC FTGGGVGGGS GYSGGYGNGG GGGYEDKSKI GDYYREMLRS NPNNSLLLMN YGKFLYEVEK DAEGAEEYYG RAILENPGDG
201: EALSMYGRLI WETKRDEKRA QGYFDQAVNA SPNDCMVLGS YARFMWEAED DDDDDEEEEE EEWMAASPLM VSAV

Arabidopsis Description

Tetratricopeptide repeat (TPR)-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q0WUZ1]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.