Factsheet for TraesCS1A01G194200.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G209200.1	Wheat	plastid	95.34	94.94
Zm00001d030086_P001	Maize	plastid	63.14	59.84
Os10t0576600-01	Rice	plastid	56.78	59.03
EER91874	Sorghum	plastid	62.29	56.98
HORVU1Hr1G050780.2	Barley	plastid	86.02	53.28
GSMUA_Achr5P03500_001	Banana	plastid	46.61	44.18
Bra013269.1-P	Field mustard	mitochondrion	40.25	41.48
GSMUA_Achr4P27320_001	Banana	plastid	46.19	41.13
CDX78813	Canola	mitochondrion	39.83	41.05
CDY44501	Canola	mitochondrion	38.56	37.45
VIT_02s0012g01590.t01	Wine grape	nucleus	33.05	36.28
KRH39558	Soybean	plastid	38.56	35.97
CDY08881	Canola	plastid	37.71	34.23
CDX76550	Canola	plastid	38.14	34.22
Bra021028.1-P	Field mustard	plastid	38.14	34.22
AT4G17940.1	Thale cress	mitochondrion	38.98	33.58
Solyc08g076730.2.1	Tomato	plastid	40.25	31.46
PGSC0003DMT400045174	Potato	plastid	39.83	31.13
KRH74400	Soybean	nucleus, plastid	37.71	30.58
TraesCS7A01G377700.1	Wheat	mitochondrion	35.17	28.92
TraesCS2A01G367000.1	Wheat	plastid	27.12	23.7
TraesCS5A01G512000.1	Wheat	mitochondrion, plastid	30.93	23.25
TraesCS1A01G172600.1	Wheat	plastid	21.19	14.53
TraesCS3A01G368600.1	Wheat	plastid	25.42	12.47
TraesCS1A01G278600.1	Wheat	plastid	22.46	11.28

Protein Annotations

EnsemblPlants:TraesCS1A01G194200.1	EnsemblPlantsGene:TraesCS1A01G194200	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR011990	InterPro:IPR013026	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR26312	PANTHER:PTHR26312:SF53
PFscan:PS50293	SEG:seg	SUPFAM:SSF48452	MapMan:35.2	:	:

Description

No Description!

Coordinates

chr1A:-:351475258..351476062

Molecular Weight (calculated)

24936.0 Da

IEP (calculated)

5.156

GRAVY (calculated)

-0.509

Length

236 amino acids

Sequence
(BLAST)

001: MEATSSLTRS LSLVPRPRRS SRAAKSPHMP TLSPAPRVLP LRRARSDADL LGSVPAAAPA SAGSVLLRSP RPRTRNDEDA PMEDCFDGAG AGKGNNSSGR
101: GGGSGGAGGN GQSAGMGEHY RRVLRLEPDN PLLLRNYGKY LHEVERDLAG AEEYYGRALL ACPGDADLLS LYGRVLWEAN QDKDRAAGYF ERAVQAAPDD
201: CYVLGSYASF LWDAEDEDEE GASTAAASSP ALVPAC

Best Arabidopsis Sequence Match ( AT4G17940.1 )
(BLAST)

001: MKSLLMRTGS MPVLQNRLIS GGSSRKMTPI SRTNSVESLS SYGERFAGGK ISIEVKANVG MRRVLSESDV IRSERMLKRV GSKPSPARIP EDDEAGEEEI
101: RFADGWGSMI SGGLPVEEKC FTGGGVGGGS GYSGGYGNGG GGGYEDKSKI GDYYREMLRS NPNNSLLLMN YGKFLYEVEK DAEGAEEYYG RAILENPGDG
201: EALSMYGRLI WETKRDEKRA QGYFDQAVNA SPNDCMVLGS YARFMWEAED DDDDDEEEEE EEWMAASPLM VSAV

Arabidopsis Description

Tetratricopeptide repeat (TPR)-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q0WUZ1]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.