Factsheet for VIT_02s0012g01590.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol, nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra013269.1-P	Field mustard	mitochondrion	52.09	48.91
CDX78813	Canola	mitochondrion	51.16	48.03
CDY08881	Canola	plastid	54.88	45.38
CDY44501	Canola	mitochondrion	51.16	45.27
Bra021028.1-P	Field mustard	plastid	54.42	44.49
CDX76550	Canola	plastid	53.95	44.11
KRH39558	Soybean	plastid	51.63	43.87
VIT_07s0005g04340.t01	Wine grape	cytosol, mitochondrion, nucleus	24.65	43.8
AT4G17940.1	Thale cress	mitochondrion	53.49	41.97
GSMUA_Achr5P03500_001	Banana	plastid	44.65	38.55
GSMUA_Achr4P27320_001	Banana	plastid	47.44	38.49
KRH74400	Soybean	nucleus, plastid	51.16	37.8
PGSC0003DMT400045174	Potato	plastid	51.16	36.42
Solyc08g076730.2.1	Tomato	plastid	51.16	36.42
TraesCS1A01G194200.1	Wheat	plastid	36.28	33.05
TraesCS1B01G209200.1	Wheat	plastid	34.88	31.65
Os10t0576600-01	Rice	plastid	33.02	31.28
Zm00001d030086_P001	Maize	plastid	33.02	28.51
VIT_11s0016g05430.t01	Wine grape	plastid	37.67	28.12
EER91874	Sorghum	plastid	33.49	27.91
VIT_09s0002g06810.t01	Wine grape	cytosol	34.42	24.18
HORVU1Hr1G050780.2	Barley	plastid	30.23	17.06
VIT_05s0049g01950.t01	Wine grape	plastid	28.37	11.49
VIT_13s0067g00240.t01	Wine grape	cytosol	20.0	10.78
VIT_06s0004g06290.t01	Wine grape	plastid	20.93	8.51

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100245547	wikigene:100245547	MapMan:35.2	ProteinID:CCB57884	ProteinID:CCB57884.1
UniProt:F6HT74	EMBL:FN596247	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR011990
InterPro:IPR013026	EntrezGene:LOC100245547	wikigene:LOC100245547	PFscan:PS50293	PANTHER:PTHR26312	PANTHER:PTHR26312:SF53
SUPFAM:SSF48452	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0002109B91	ArrayExpress:VIT_02s0012g01590	EnsemblPlantsGene:VIT_02s0012g01590
EnsemblPlants:VIT_02s0012g01590.t01	RefSeq:XP_002277674	RefSeq:XP_002277674.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr2:+:7864692..7865787

Molecular Weight (calculated)

23738.2 Da

IEP (calculated)

3.935

GRAVY (calculated)

-0.618

Length

215 amino acids

Sequence
(BLAST)

001: MSESDIIRSE SGISKLNGVG SHSFPARIPE EEEEEDDNDD EGGPLIVKQK SVDLENHAGS WPEIGIPVEE LGFSGGGADG DGSGSFTGGG NCDRRKLATY
101: YEEMLKLNPG DSLLLRNYGK FLHEVEKDAI RAEEYYGRAI LASPGDGEVL SLYAKLIWET ERDQDRAQCY FDQAVSASPN DCMVMGSYAQ FMWEAEEEEE
201: ENEVIKIEGT MVEAF

Best Arabidopsis Sequence Match ( AT4G17940.1 )
(BLAST)

001: MKSLLMRTGS MPVLQNRLIS GGSSRKMTPI SRTNSVESLS SYGERFAGGK ISIEVKANVG MRRVLSESDV IRSERMLKRV GSKPSPARIP EDDEAGEEEI
101: RFADGWGSMI SGGLPVEEKC FTGGGVGGGS GYSGGYGNGG GGGYEDKSKI GDYYREMLRS NPNNSLLLMN YGKFLYEVEK DAEGAEEYYG RAILENPGDG
201: EALSMYGRLI WETKRDEKRA QGYFDQAVNA SPNDCMVLGS YARFMWEAED DDDDDEEEEE EEWMAASPLM VSAV

Arabidopsis Description

Tetratricopeptide repeat (TPR)-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q0WUZ1]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.