Factsheet for VIT_06s0004g06290.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 1
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY02002	Canola	cytosol, mitochondrion, nucleus	19.09	66.45
KRG98335	Soybean	plastid	65.41	65.04
Solyc06g076850.2.1	Tomato	plastid	65.6	62.98
KRH46437	Soybean	plastid	62.38	62.86
PGSC0003DMT400078227	Potato	plastid	65.41	62.57
CDY51354	Canola	plastid	55.01	60.37
CDX97868	Canola	plastid	57.28	60.36
Bra039995.1-P	Field mustard	plastid	55.39	60.29
Bra018368.1-P	Field mustard	plastid	52.55	59.53
AT2G29670.2	Thale cress	plastid	59.74	58.96
AT1G07280.1	Thale cress	plastid	58.79	56.34
CDY06694	Canola	plastid	54.44	56.03
Bra015570.1-P	Field mustard	plastid	54.25	55.84
CDY10264	Canola	plastid	53.88	55.13
Bra031567.1-P	Field mustard	plastid	50.85	54.34
CDY06247	Canola	plastid	50.85	54.34
CDY09927	Canola	plastid	50.09	53.54
GSMUA_Achr8P02280_001	Banana	plastid	50.09	53.0
Bra018168.1-P	Field mustard	plastid	44.99	51.97
CDX99068	Canola	plastid	44.8	51.75
VIT_13s0067g00240.t01	Wine grape	cytosol	38.94	51.63
GSMUA_Achr9P03650_001	Banana	plastid	48.96	51.08
CDX86126	Canola	plastid	45.56	49.59
AT3G47080.1	Thale cress	plastid	47.07	48.35
GSMUA_Achr11P...	Banana	plastid	45.56	48.3
Bra019495.1-P	Field mustard	plastid	41.59	47.52
TraesCS3B01G400100.1	Wheat	plastid	42.53	46.97
Os05t0447700-01	Rice	plastid	42.91	46.9
Zm00001d012325_P001	Maize	plastid	45.56	46.71
TraesCS3D01G361500.1	Wheat	plastid	42.34	46.67
CDY58299	Canola	plastid	42.72	46.6
Os01t0855200-01	Rice	plastid	44.99	46.48
CDY38075	Canola	plastid	37.24	46.46
GSMUA_Achr6P33690_001	Banana	plastid	46.88	46.44
TraesCS3A01G368600.1	Wheat	plastid	42.16	46.36
Zm00001d042812_P001	Maize	plastid	45.75	46.27
HORVU3Hr1G084970.2	Barley	plastid	41.97	45.96
TraesCS1D01G277900.1	Wheat	plastid	41.02	45.78
TraesCS1B01G287500.1	Wheat	plastid	41.21	45.51
TraesCS1A01G278600.1	Wheat	plastid	40.08	45.11
EES01775	Sorghum	plastid	45.18	45.09
KXG22120	Sorghum	plastid	41.78	43.33
Zm00001d038274_P002	Maize	plastid	39.89	42.03
HORVU1Hr1G073460.2	Barley	plastid	40.26	41.6
Zm00001d010075_P001	Maize	plastid	40.83	41.14
GSMUA_Achr5P28840_001	Banana	cytosol	42.34	39.93
VIT_07s0005g04340.t01	Wine grape	cytosol, mitochondrion, nucleus	7.75	33.88
VIT_11s0016g05430.t01	Wine grape	plastid	12.29	22.57
VIT_09s0002g06810.t01	Wine grape	cytosol	13.04	22.55
VIT_02s0012g01590.t01	Wine grape	nucleus	8.51	20.93
VIT_05s0049g01950.t01	Wine grape	plastid	12.67	12.62

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100253483	wikigene:100253483	MapMan:35.2	ProteinID:CCB43493	ProteinID:CCB43493.1
UniProt:F6GUT5	EMBL:FN594951	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR011990
InterPro:IPR013026	InterPro:IPR019734	EntrezGene:LOC100253483	wikigene:LOC100253483	PFscan:PS50005	PFscan:PS50293
PANTHER:PTHR26312	PANTHER:PTHR26312:SF83	SUPFAM:SSF48452	TIGR:TC64413	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf
InterPro:TPR_repeat	UniParc:UPI0002108C22	ArrayExpress:VIT_06s0004g06290	EnsemblPlantsGene:VIT_06s0004g06290	EnsemblPlants:VIT_06s0004g06290.t01	unigene:Vvi.7612
RefSeq:XP_002279786	RefSeq:XP_002279786.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr6:-:7071711..7074642

Molecular Weight (calculated)

58888.8 Da

IEP (calculated)

5.029

GRAVY (calculated)

-0.401

Length

529 amino acids

Sequence
(BLAST)

001: MGVKVATTCL QWSQPIVSHS PSSSQTLASA ISSPPSKRRN RCDGGALVCR YVHRLDRSAF FGIPSTKLCS SRSFESPKPR AHKIKRACSA GLDSLSDEEF
101: SKRIEELALR FQVSDEDEST TNNAMDAEDE IVPANIERKA NSVDLPLSLR IIKRKKQWQE GFREAGESAY CSVKKAFSSM VFIIRELHSF TLQMREVLLY
201: QDLQGILDRV QQEMHASFVW LFQQVFSHTP TLMVYVMILL ANFTVYSIAN NTAIAASPPP SPHAATIESV LVSDSQQDKQ QKFDSSIIKK FSVSSTNGKT
301: TSIGNNGGGG GKVRPAASGT DGDGRFDRSE FHQTILPDGV SQISIGTTRE SESVSGEVTR EEEVAHWNSI VDEASKMQAA LRDESLDHET MQRFVSPVEA
401: KIEADDYADY FRAELLYQMG LAREPNNPLL LANYAQFLYL VAHDYDRAEE YFKRAIAVEP PDAEAYNKYA SFLWVAKKDL WAAEETYLEA IAADPSNTYY
501: AANYAHFLWS TGGDDTCFPL SPSDDTQDA

Best Arabidopsis Sequence Match ( AT2G29670.2 )
(BLAST)

001: MGVKVASSST FLQWTTQPII HQSSSPSQTL ASGTITSPSK RRSTVHDGRF LSCRFVTQRL NRSALFGTPS TKLHRPKSCE LWKSSSSSSR PIKTQSFRRV
101: YSANLDPFSD EEFSKKIQEL TLRFNIPHHD DDENSIEPPW NEMVHLSSIE MKANSVDLPL SLRIIKKKRQ WEEGVKQAGE SACCSMNKAF SSMVFMIREL
201: QSFTLHMREI LFYEDLQEIL LRVREEMQQS FVWLFQQVFS ATPTLMVYVM ILLANFTVYS IGNNSSALAA VAPLPPTITE LTTVSETEET NVKFDSSVVK
301: TFFVSSPSGS IASVGGNNNG GGGNVKPVLS GTDGDGSDGS EQFRTIIPEG VSQLSSSNFG SEPSVSGQDE HRLWNSMVEE AERMQYSNID DSLDQETRKR
401: FVSHVEARVE AEEDTGYFKT ELMYQTELSQ EPNNPLLLAN YAQFLYLVSN DHDRAEEYFK RAVGVEPKDA EAFSKYATFL WRARDDLWAA EETFLEAIDA
501: DPTNSYYAAN YANFLWNTGG DDTCFPLDDE SHEDTI

Arabidopsis Description

At2g29670/T27A16.23 [Source:UniProtKB/TrEMBL;Acc:O82388]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.