Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 1
- plastid 1
- peroxisome 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_06s0004g06290.t01 | Wine grape | plastid | 51.63 | 38.94 |
| PGSC0003DMT400069757 | Potato | plastid | 42.36 | 37.81 |
| Solyc05g052700.2.1 | Tomato | extracellular | 41.85 | 37.03 |
| KRH73162 | Soybean | mitochondrion | 44.11 | 36.51 |
| KRH14978 | Soybean | cytosol, plastid | 43.61 | 36.48 |
| Os08t0382600-00 | Rice | mitochondrion | 15.79 | 36.0 |
| VIT_07s0005g04340.t01 | Wine grape | cytosol, mitochondrion, nucleus | 9.77 | 32.23 |
| HORVU1Hr1G073400.1 | Barley | endoplasmic reticulum | 20.55 | 25.62 |
| VIT_02s0012g01590.t01 | Wine grape | nucleus | 10.78 | 20.0 |
| VIT_09s0002g06810.t01 | Wine grape | cytosol | 13.03 | 16.99 |
| VIT_11s0016g05430.t01 | Wine grape | plastid | 11.53 | 15.97 |
| VIT_05s0049g01950.t01 | Wine grape | plastid | 12.78 | 9.6 |
Protein Annotations
| Gene3D:1.25.40.10 | EntrezGene:100255315 | wikigene:100255315 | MapMan:35.2 | EMBL:AM484831 | ProteinID:CAN79749 |
| ProteinID:CAN79749.1 | ProteinID:CCB49885 | ProteinID:CCB49885.1 | UniProt:F6HC05 | EMBL:FN595514 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR011990 | InterPro:IPR013026 | EntrezGene:LOC100255315 | wikigene:LOC100255315 |
| PFscan:PS50293 | PANTHER:PTHR26312 | PANTHER:PTHR26312:SF83 | SUPFAM:SSF48452 | InterPro:TPR-contain_dom | InterPro:TPR-like_helical_dom_sf |
| UniParc:UPI0002108770 | ArrayExpress:VIT_13s0067g00240 | EnsemblPlantsGene:VIT_13s0067g00240 | EnsemblPlants:VIT_13s0067g00240.t01 | RefSeq:XP_002271028 | RefSeq:XP_002271028.2 |
Description
No Description!
Coordinates
chr13:-:171556..173017
Molecular Weight (calculated)
45809.3 Da
IEP (calculated)
4.336
GRAVY (calculated)
-0.273
Length
399 amino acids
Sequence
(BLAST)
(BLAST)
001: MGFSASFSFS KLDSLRPSWL EIWPEPPNWP GRDEIIQASI ERKAVRFDIP VSLRMIKRKQ QWEEGVTKGE DSVYCSVKKA FSSMVFIIRE LQSYSLQIKE
101: ILYCEDLQGI LSRVHRELHA SFVWLFQQVF SKTPTLMVYL MILLANFTVY SLMDDTENAE TSIPPTSCMI TETFSVTERE NQPQPNFESL IFLKTSSVTS
201: PNEVVKTSIS TRPLPMTLCS NVVADEYGSE ELTHMEEVNL WNSVVEEASR MAAESGAEAL DHETIQRMVS PVGVELEADD YIEYFRTDLL YQIRISEDPN
301: NPLLFCNYGQ FLRLFARDQD RAEECFKRAV EVEPEDGEAL NQYANFLWMV RKDLWGAEER FLQAMAAEPG NPYHVSNYAT FLWNTGGGDT CFPLQPSQL
101: ILYCEDLQGI LSRVHRELHA SFVWLFQQVF SKTPTLMVYL MILLANFTVY SLMDDTENAE TSIPPTSCMI TETFSVTERE NQPQPNFESL IFLKTSSVTS
201: PNEVVKTSIS TRPLPMTLCS NVVADEYGSE ELTHMEEVNL WNSVVEEASR MAAESGAEAL DHETIQRMVS PVGVELEADD YIEYFRTDLL YQIRISEDPN
301: NPLLFCNYGQ FLRLFARDQD RAEECFKRAV EVEPEDGEAL NQYANFLWMV RKDLWGAEER FLQAMAAEPG NPYHVSNYAT FLWNTGGGDT CFPLQPSQL
001: MGVKVASSST FLQWTTQPII HQSSSPSQTL ASGTITSPSK RRSTVHDGRF LSCRFVTQRL NRSALFGTPS TKLHRPKSCE LWKSSSSSSR PIKTQSFRRV
101: YSANLDPFSD EEFSKKIQEL TLRFNIPHHD DDENSIEPPW NEMVHLSSIE MKANSVDLPL SLRIIKKKRQ WEEGVKQAGE SACCSMNKAF SSMVFMIREL
201: QSFTLHMREI LFYEDLQEIL LRVREEMQQS FVWLFQQVFS ATPTLMVYVM ILLANFTVYS IGNNSSALAA VAPLPPTITE LTTVSETEET NVKFDSSVVK
301: TFFVSSPSGS IASVGGNNNG GGGNVKPVLS GTDGDGSDGS EQFRTIIPEG VSQLSSSNFG SEPSVSGQDE HRLWNSMVEE AERMQYSNID DSLDQETRKR
401: FVSHVEARVE AEEDTGYFKT ELMYQTELSQ EPNNPLLLAN YAQFLYLVSN DHDRAEEYFK RAVGVEPKDA EAFSKYATFL WRARDDLWAA EETFLEAIDA
501: DPTNSYYAAN YANFLWNTGG DDTCFPLDDE SHEDTI
101: YSANLDPFSD EEFSKKIQEL TLRFNIPHHD DDENSIEPPW NEMVHLSSIE MKANSVDLPL SLRIIKKKRQ WEEGVKQAGE SACCSMNKAF SSMVFMIREL
201: QSFTLHMREI LFYEDLQEIL LRVREEMQQS FVWLFQQVFS ATPTLMVYVM ILLANFTVYS IGNNSSALAA VAPLPPTITE LTTVSETEET NVKFDSSVVK
301: TFFVSSPSGS IASVGGNNNG GGGNVKPVLS GTDGDGSDGS EQFRTIIPEG VSQLSSSNFG SEPSVSGQDE HRLWNSMVEE AERMQYSNID DSLDQETRKR
401: FVSHVEARVE AEEDTGYFKT ELMYQTELSQ EPNNPLLLAN YAQFLYLVSN DHDRAEEYFK RAVGVEPKDA EAFSKYATFL WRARDDLWAA EETFLEAIDA
501: DPTNSYYAAN YANFLWNTGG DDTCFPLDDE SHEDTI
Arabidopsis Description
At2g29670/T27A16.23 [Source:UniProtKB/TrEMBL;Acc:O82388]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.