Factsheet for VIT_05s0049g01950.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_07s0005g04340.t01	Wine grape	cytosol, mitochondrion, nucleus	13.37	58.68
PGSC0003DMT400003940	Potato	nucleus	38.79	51.24
Solyc09g090930.2.1	Tomato	nucleus	38.04	50.75
KRG92250	Soybean	cytosol	36.91	50.65
KRH34549	Soybean	nucleus	36.72	49.87
Solyc03g005710.1.1	Tomato	cytosol	31.64	44.44
GSMUA_Achr1P01000_001	Banana	plastid	21.85	42.8
HORVU5Hr1G031990.1	Barley	nucleus	9.42	42.37
TraesCS2A01G367000.1	Wheat	plastid	20.72	40.74
Os04t0510600-01	Rice	plastid	21.09	40.43
TraesCS2D01G363900.1	Wheat	mitochondrion, plastid	20.53	40.37
TraesCS4B01G342900.1	Wheat	mitochondrion	22.79	38.41
TraesCS5A01G512000.1	Wheat	mitochondrion, plastid	22.6	38.22
GSMUA_Achr5P15660_001	Banana	plastid	20.72	37.93
Zm00001d003035_P001	Maize	plastid	19.77	37.77
HORVU2Hr1G088520.1	Barley	cytosol, nucleus, plastid	20.72	36.91
Os03t0140700-01	Rice	plastid	23.54	36.87
EER92881	Sorghum	plastid	23.35	36.58
HORVU4Hr1G084230.1	Barley	mitochondrion, plastid	22.6	35.19
EES12482	Sorghum	nucleus	21.66	34.85
Zm00001d027613_P002	Maize	plastid	22.79	33.99
PGSC0003DMT400035002	Potato	plastid	44.44	33.33
VIT_11s0016g05430.t01	Wine grape	plastid	17.14	31.6
VIT_09s0002g06810.t01	Wine grape	cytosol	17.33	30.07
VIT_02s0012g01590.t01	Wine grape	nucleus	11.49	28.37
VIT_13s0067g00240.t01	Wine grape	cytosol	9.6	12.78
VIT_06s0004g06290.t01	Wine grape	plastid	12.62	12.67

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100261301	MapMan:35.2	ProteinID:CBI23722	ProteinID:CBI23722.3	UniProt:D7SZP3
EMBL:FN595496	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0006139	GO:GO:0006396
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	InterPro:HAT	InterPro:IPR011990	InterPro:IPR013026
InterPro:IPR019734	PFAM:PF13181	PFscan:PS50005	PFscan:PS50293	PANTHER:PTHR26312	PANTHER:PTHR26312:SF78
SMART:SM00386	SUPFAM:SSF48452	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat	UniParc:UPI0001983563
ArrayExpress:VIT_05s0049g01950	EnsemblPlantsGene:VIT_05s0049g01950	EnsemblPlants:VIT_05s0049g01950.t01	unigene:Vvi.21847	RefSeq:XP_010650161.1	RefSeq:XP_010650162.1
RefSeq:XP_010650163.1	RefSeq:XP_019075693.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr5:-:9421038..9424579

Molecular Weight (calculated)

59100.7 Da

IEP (calculated)

4.225

GRAVY (calculated)

-0.612

Length

531 amino acids

Sequence
(BLAST)

001: MLLRSSSTPV LGTTLLSPFS ESPSRDSESS SHGNPTTKIT FSHSGHLSFP LFSCNSSPLP HSFDQEPNSS INPKGFRRSR SEGNLEGLGH SSFDLEEFRR
101: SESNTSKKYF DKTHKAMLET TPSFSIYNLT QGVEGEEGSQ QEEIEGEVFV LERTITIEES IRGTTSREFS FGRKTMGLIE EEEEEEDVNG FQKLGVEDGV
201: EPVSPLMYLA TGLGMDGAGF GGGRVDFAAA DFDESGDVEE YYRRMVNEDP CNPLFLRNYA QLLQSKGDLQ RAEEYYSRAT LADPQDGEIL MQYAKLIWDV
301: HRDQARALSY FERAAKVASD DSHVLAANAS FLWDIEDEGE DDTAEQGLVE EGLSEFHNLD QEDENKPASP SLHPAAGLGI DVAACGSVGC VDFSSINASE
401: ISKVEEHYKK MVEENPCNPL FLRNYAQFLF QTKGELQQAE EYYSRAILAD PGDGEIMSQY AKLAWELHHD RDKALSYFKQ AVQATPGDSH VLAAYARFLW
501: ETDEEEEENN ASMQDHIQVS LFHEAATSAN A

Best Arabidopsis Sequence Match ( AT1G04530.1 )
(BLAST)

001: MLKSEASLSI YCDSGDGFKS EDPVTGIEEN LERTVTIGDA IDGGEFSFAK HKEEDSGEGE RGVFEEVIKK LGIGVRDELG FEIERPPSPP MHLAAGLGID
101: KFDLYGSEIK FDLPGYDDKN CGDYYKGMLE EYPLHPLLLK NYAKFLEYKG DLSGAEEYYH KCTVVEPSDG VALANYGRLV MKLHQDEAKA MSYFERAVQA
201: SPDDSIVLAA YASFLWEINA DDDDEDDDED DDESSGQGKD EFEADAAGKG KSSLSKTEDG ETLCRYAKAF WSINNDHEKA LFYFEKAVEA SPNDSIILGE
301: YARFLWEIDE

Arabidopsis Description

TPR4Tetratricopeptide repeat (TPR)-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q8VZ31]
SUBAcon: [cytoskeleton,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.