Factsheet for VIT_09s0002g06810.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
plastid 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr2P15930_001	Banana	cytosol	22.55	57.5
KRH20249	Soybean	plastid	48.04	57.2
KRH03683	Soybean	plastid	48.37	56.7
VIT_11s0016g05430.t01	Wine grape	plastid	50.65	53.82
Bra020090.1-P	Field mustard	cytosol	32.68	51.55
PGSC0003DMT400079441	Potato	plastid	35.29	46.55
CDX92483	Canola	plastid	42.48	46.43
VIT_07s0005g04340.t01	Wine grape	cytosol, mitochondrion, nucleus	18.3	46.28
CDY60380	Canola	plastid	40.52	46.27
Bra002280.1-P	Field mustard	plastid	42.81	46.13
Solyc07g008210.2.1	Tomato	cytosol, nucleus, plastid	34.64	46.09
CDY45101	Canola	plastid	42.16	45.58
AT5G20190.1	Thale cress	plastid	43.14	45.52
CDX88849	Canola	plastid	39.54	44.98
CDY35827	Canola	plastid	42.16	44.33
Bra006547.1-P	Field mustard	plastid	39.54	44.32
TraesCS7A01G377700.1	Wheat	mitochondrion	38.89	41.46
HORVU7Hr1G090280.1	Barley	mitochondrion	38.89	41.32
TraesCS7D01G374500.1	Wheat	mitochondrion	37.91	40.99
TraesCS7B01G279400.1	Wheat	mitochondrion	38.56	40.27
Os06t0606700-00	Rice	plastid	36.27	39.93
Zm00001d046530_P001	Maize	plastid	37.58	38.72
EER88623	Sorghum	mitochondrion	37.58	35.94
VIT_02s0012g01590.t01	Wine grape	nucleus	24.18	34.42
Os04t0496700-00	Rice	nucleus	19.61	29.13
Os07t0542800-00	Rice	cytosol, mitochondrion, nucleus, plastid	18.95	23.58
VIT_05s0049g01950.t01	Wine grape	plastid	30.07	17.33
VIT_06s0004g06290.t01	Wine grape	plastid	22.55	13.04
VIT_13s0067g00240.t01	Wine grape	cytosol	16.99	13.03

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100243938	wikigene:100243938	MapMan:35.2	EMBL:AM481498	ProteinID:CAN73025
ProteinID:CAN73025.1	ProteinID:CCB59599	ProteinID:CCB59599.1	UniProt:F6HXC9	EMBL:FN596494	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR011990	InterPro:IPR013026	EntrezGene:LOC100243938	wikigene:LOC100243938
PFAM:PF13431	PFscan:PS50293	PANTHER:PTHR26312	PANTHER:PTHR26312:SF75	SUPFAM:SSF48452	TIGR:TC64625
InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	UniParc:UPI00015CD0DD	ArrayExpress:VIT_09s0002g06810	EnsemblPlantsGene:VIT_09s0002g06810	EnsemblPlants:VIT_09s0002g06810.t01
RefSeq:XP_002267739	RefSeq:XP_002267739.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr9:+:6723841..6725667

Molecular Weight (calculated)

32953.7 Da

IEP (calculated)

4.488

GRAVY (calculated)

-0.611

Length

306 amino acids

Sequence
(BLAST)

001: MLLRSSSTPI LNSWIQPYGK DTSPETDLVH QIPKTKSLSL SASFQSPPHT APSITTSAGS LQKMARALSE TDLRDPPKRN THEKWFSPPT VDEGEEQDSI
101: RSLLSSSGLG ESERCGVEDG GPATLEMGGG IRGNGGGIFG GGGYGKGSSG GDGDGHGGGA YESNYGHEST DVYYQKMIEA NPENALFLGN YAKFLKEVRG
201: DLVKAEEYCG RAILVNPSDG NVLSFYADLI WNNQKDAQRA ETYFNQAVRV APDDCYVLAS YAHFLWETEE EDEEDSRYET ATANTHGFSP SFFPGGPFHS
301: PLAAAS

Best Arabidopsis Sequence Match ( AT5G20190.1 )
(BLAST)

001: MLLRSASTPL LNSLVHVSSP RDSPIETVES VHQIQRHRSI TLSASSSSCC YSPMSVHSSD DSSRRMKRTA SDSDLRHLTS TKPPVSKFLS GGALMEDVDE
101: GIGFGLIRTS SYDGISWALD EDTEVAGGGG GGMFHGGGKG RSGGRSDGGD GGDDNTDVHY RKMIEANPGN GIFLSNYAKF LKEVRKDYLK AEEYCGRAIL
201: VSPNDGNVLA MYAELVWKIH KDSSRAENYF NQAVAAAPED CYVQASYARF LWDAEEEEEE EKEERHEEEL EHQTSRMNFF TGPSPITAMS

Arabidopsis Description

Tetratricopeptide repeat (TPR)-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4K464]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.