Factsheet for Bra006547.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
cytosol 1
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX88849	Canola	plastid	96.7	98.14
AT5G20190.1	Thale cress	plastid	83.52	78.62
Bra002280.1-P	Field mustard	plastid	79.85	76.76
Bra020090.1-P	Field mustard	cytosol	51.65	72.68
GSMUA_Achr2P15930_001	Banana	cytosol	24.18	55.0
KRH20249	Soybean	plastid	46.52	49.42
KRH03683	Soybean	plastid	45.79	47.89
VIT_11s0016g05430.t01	Wine grape	plastid	45.42	43.06
VIT_09s0002g06810.t01	Wine grape	cytosol	44.32	39.54
HORVU7Hr1G090280.1	Barley	mitochondrion	38.1	36.11
TraesCS7D01G374500.1	Wheat	mitochondrion	37.36	36.04
Bra035194.1-P	Field mustard	nucleus	40.29	35.95
TraesCS7A01G377700.1	Wheat	mitochondrion	37.73	35.89
Os06t0606700-00	Rice	plastid	36.26	35.61
PGSC0003DMT400079441	Potato	plastid	30.04	35.34
Bra011339.1-P	Field mustard	plastid	31.5	35.25
Solyc07g008210.2.1	Tomato	cytosol, nucleus, plastid	29.67	35.22
Bra013269.1-P	Field mustard	mitochondrion	29.3	34.93
Bra008495.1-P	Field mustard	mitochondrion, nucleus	38.46	34.77
Zm00001d046530_P001	Maize	plastid	37.0	34.01
TraesCS7B01G279400.1	Wheat	mitochondrion	36.26	33.79
EER88623	Sorghum	mitochondrion	37.73	32.19
Bra021028.1-P	Field mustard	plastid	28.94	30.04
Os04t0496700-00	Rice	nucleus	17.22	22.82
Os07t0542800-00	Rice	cytosol, mitochondrion, nucleus, plastid	19.05	21.14
Bra015324.1-P	Field mustard	nucleus	23.81	20.38
Bra039995.1-P	Field mustard	plastid	24.91	13.99
Bra018368.1-P	Field mustard	plastid	23.08	13.49
Bra031567.1-P	Field mustard	plastid	20.88	11.52
Bra015570.1-P	Field mustard	plastid	21.61	11.48
Bra018168.1-P	Field mustard	plastid	18.68	11.14
Bra019495.1-P	Field mustard	plastid	16.48	9.72

Protein Annotations

EnsemblPlants:Bra006547.1	EnsemblPlants:Bra006547.1-P	EnsemblPlantsGene:Bra006547	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR011990	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR26312	PANTHER:PTHR26312:SF75	SEG:seg
SUPFAM:SSF48452	UniParc:UPI000253FFD3	UniProt:M4CQQ6	MapMan:35.2	:	:

Description

AT5G20190 (E=1e-062) | binding

Coordinates

chrA03:+:3990735..3991717

Molecular Weight (calculated)

29728.4 Da

IEP (calculated)

4.865

GRAVY (calculated)

-0.519

Length

273 amino acids

Sequence
(BLAST)

001: MLLRSASTPL LTSLVHVSSP RESPIETESL HQIQRPRSIT LSSSSSSSCC YSPMSLHSSD ESSRRIKRTA SESDLKHLTS TKHASKFLGG ALMEDVEEGI
101: GFGIIRGSSY ETEVGGGGGG GGGKRRSGGR SGGDDGDGEN DSTDVHYREM IEANPGNGIF LSNYAKFLKE VRGDYLKAEE YCGRAVLVSP YDGNVLAMYA
201: ELVWMIHKDS SRAESYFSRA VAAAPDDCYV QASYARFLWD AEDDEDERHG EVLEAQTSRM DFFTGPYPIT AMS

Best Arabidopsis Sequence Match ( AT5G20190.1 )
(BLAST)

001: MLLRSASTPL LNSLVHVSSP RDSPIETVES VHQIQRHRSI TLSASSSSCC YSPMSVHSSD DSSRRMKRTA SDSDLRHLTS TKPPVSKFLS GGALMEDVDE
101: GIGFGLIRTS SYDGISWALD EDTEVAGGGG GGMFHGGGKG RSGGRSDGGD GGDDNTDVHY RKMIEANPGN GIFLSNYAKF LKEVRKDYLK AEEYCGRAIL
201: VSPNDGNVLA MYAELVWKIH KDSSRAENYF NQAVAAAPED CYVQASYARF LWDAEEEEEE EKEERHEEEL EHQTSRMNFF TGPSPITAMS

Arabidopsis Description

Tetratricopeptide repeat (TPR)-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4K464]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.