CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
plastid 2
mitochondrion 5
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	mitochondrion
Plant-mPloc:	nucleus
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d046530_P001	Maize	plastid	80.31	86.53
GSMUA_Achr2P15930_001	Banana	cytosol	24.69	65.83
Os06t0606700-00	Rice	plastid	55.0	63.31
TraesCS7D01G374500.1	Wheat	mitochondrion	54.69	61.84
TraesCS7A01G377700.1	Wheat	mitochondrion	55.31	61.67
TraesCS7B01G279400.1	Wheat	mitochondrion	55.31	60.41
HORVU7Hr1G090280.1	Barley	mitochondrion	53.75	59.72
KRH09728	Soybean	cytosol	17.81	50.44
KRH20249	Soybean	plastid	35.0	43.58
Bra020090.1-P	Field mustard	cytosol	26.25	43.3
KRH03683	Soybean	plastid	35.31	43.3
Solyc07g008210.2.1	Tomato	cytosol, nucleus, plastid	29.38	40.87
Os04t0496700-00	Rice	nucleus	25.94	40.29
AT4G32340.1	Thale cress	mitochondrion	29.69	39.92
PGSC0003DMT400079441	Potato	plastid	28.44	39.22
Bra011339.1-P	Field mustard	plastid	29.69	38.93
Bra002280.1-P	Field mustard	plastid	34.38	38.73
CDX75237	Canola	plastid	30.0	38.71
CDX92483	Canola	plastid	33.75	38.57
KRH23575	Soybean	plastid	30.94	38.52
CDX68837	Canola	mitochondrion, plastid	30.0	38.4
CDY60380	Canola	plastid	31.88	38.06
CDY45101	Canola	plastid	33.44	37.81
Bra006547.1-P	Field mustard	plastid	32.19	37.73
VIT_09s0002g06810.t01	Wine grape	cytosol	35.94	37.58
CDX88849	Canola	plastid	31.56	37.55
PGSC0003DMT400001660	Potato	mitochondrion, nucleus, plastid	37.5	37.5
CDY35827	Canola	plastid	34.06	37.46
AT5G20190.1	Thale cress	plastid	33.75	37.24
Solyc03g116670.2.1	Tomato	nucleus	36.56	37.14
VIT_11s0016g05430.t01	Wine grape	plastid	33.12	36.81
PGSC0003DMT400073455	Potato	plastid	26.56	35.56
AT1G80130.1	Thale cress	nucleus	33.12	34.75
Solyc06g068130.2.1	Tomato	plastid	25.94	34.58
KRH44461	Soybean	plastid	32.5	33.02
KRH47446	Soybean	plastid	32.5	33.02
EER91874	Sorghum	plastid	25.94	32.17
Bra035194.1-P	Field mustard	nucleus	30.31	31.7
CDY39992	Canola	nucleus	30.31	31.7
CDX87295	Canola	nucleus	25.0	31.62
Os07t0542800-00	Rice	cytosol, mitochondrion, nucleus, plastid	24.06	31.3
Bra008495.1-P	Field mustard	mitochondrion, nucleus	28.75	30.46
CDY41120	Canola	mitochondrion	27.81	28.99
CDY37568	Canola	nucleus	28.44	28.98
EER92881	Sorghum	plastid	30.0	28.32
EES12482	Sorghum	nucleus	24.38	23.64
EER93981	Sorghum	plastid	18.75	16.22
KXG22120	Sorghum	plastid	23.12	14.51
EES01775	Sorghum	plastid	23.12	13.96

Protein Annotations

EnsemblPlants:EER88623	EnsemblPlantsGene:SORBI_3010G186400	EntrezGene:8065079	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR011990	InterPro:IPR013026	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR26312
PANTHER:PTHR26312:SF75	PFscan:PS50293	ProteinID:EER88623	ProteinID:EER88623.1	RefSeq:XP_002437256.1	SEG:seg
SUPFAM:SSF48452	unigene:Sbi.15077	UniParc:UPI0001A893F7	UniProt:C5Z5P4	MapMan:35.2	:

Description

hypothetical protein

Coordinates

chr10:+:52706694..52708209

Molecular Weight (calculated)

32603.6 Da

IEP (calculated)

4.094

GRAVY (calculated)

-0.132

Length

320 amino acids

Sequence
(BLAST)

001: MLLRSASSPL LNCVRAPAAS AAAAVEHLAV VSPLLSPAVA AAPRQGAVLC RAMSEGDLAA PLVPAKKDHE GLHGRALPRL SASSSSSASI SLEEDDSEGV
101: GEEEEEEETV VAVGADVPLP LRRLLTSTGL DVSASVSVSA AAAREALALV ELQGVGGSSG GGNGKALGSS GGQGGVGDGG GGGGDNRAAT DTHYRQMIEA
201: DPGNSLLLVN YARFLKEVEG DAARAQEYCE RAILASPGDA EALSLYAGLV WETSRDAARA DDYYSRAVQA APDDCYVLGS YAGFLWDAEE DDEENDNSET
301: LPPPSLFQGA VQHPSITAAS

Best Arabidopsis Sequence Match ( AT1G80130.1 )
(BLAST)

001: MLLRSTSAPI LNSWLPQHCS RESSPEPESQ LWRRSTSLSL FSSKSIDGHT GEQLHQALSD NKEIIILKSK SNEHSYKTPT SSRQRRSSLD ETRYTKKTLD
101: RSSPFLVERL FSSSGQGDKA SSNDRLETLV SGGGGGMGGS GGNICNGGGG VGGSGVDGGR SEDATDTYYR EMIDSNPGNS LLTGNYAKFL KEVKGDMKKA
201: EEYCERAILG NTNDGNVLSL YADLILHNHQ DRQRAHSYYK QAVKMSPEDC YVQASYARFL WDVDEDEEDE ALGEEEENLS DETGHVPPTT MFRDFPQHTS
301: ITASS

Arabidopsis Description

F18B13.21 protein [Source:UniProtKB/TrEMBL;Acc:Q9SSC6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.