Factsheet for PGSC0003DMT400001660

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus

Predictor Summary:

plastid 4
mitochondrion 3
nucleus 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g116670.2.1	Tomato	nucleus	90.62	92.06
GSMUA_Achr2P15930_001	Banana	cytosol	20.94	55.83
KRH09728	Soybean	cytosol	17.5	49.56
PGSC0003DMT400073455	Potato	plastid	36.56	48.95
KRH23575	Soybean	plastid	35.94	44.75
PGSC0003DMT400079441	Potato	plastid	31.56	43.53
TraesCS7D01G374500.1	Wheat	mitochondrion	36.88	41.7
AT1G80130.1	Thale cress	nucleus	39.69	41.64
TraesCS7A01G377700.1	Wheat	mitochondrion	36.88	41.12
Zm00001d046530_P001	Maize	plastid	38.12	41.08
Os06t0606700-00	Rice	plastid	35.62	41.01
AT4G32340.1	Thale cress	mitochondrion	30.31	40.76
HORVU7Hr1G090280.1	Barley	mitochondrion	36.56	40.62
CDX87295	Canola	nucleus	31.56	39.92
CDX75237	Canola	plastid	30.94	39.92
CDX68837	Canola	mitochondrion, plastid	30.94	39.6
Bra011339.1-P	Field mustard	plastid	30.0	39.34
TraesCS7B01G279400.1	Wheat	mitochondrion	35.94	39.25
KRH44461	Soybean	plastid	37.81	38.41
CDY39992	Canola	nucleus	36.56	38.24
Bra008495.1-P	Field mustard	mitochondrion, nucleus	35.94	38.08
Bra035194.1-P	Field mustard	nucleus	36.25	37.91
EER88623	Sorghum	mitochondrion	37.5	37.5
CDY37568	Canola	nucleus	36.56	37.26
CDY41120	Canola	mitochondrion	35.62	37.13
KRH47446	Soybean	plastid	35.94	36.51
Os04t0496700-00	Rice	nucleus	20.62	32.04
PGSC0003DMT400045174	Potato	plastid	27.5	29.14
Os07t0542800-00	Rice	cytosol, mitochondrion, nucleus, plastid	20.62	26.83
PGSC0003DMT400022129	Potato	plastid	26.88	23.89
PGSC0003DMT400003940	Potato	nucleus	18.12	14.43
PGSC0003DMT400069757	Potato	plastid	19.69	14.09
PGSC0003DMT400078227	Potato	plastid	20.94	12.12
PGSC0003DMT400035002	Potato	plastid	24.38	11.02

Protein Annotations

EnsemblPlants:PGSC0003DMT400001660	EnsemblPlantsGene:PGSC0003DMG400000618	EntrezGene:102599788	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR011990	InterPro:IPR013026	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR26312
PANTHER:PTHR26312:SF75	PFscan:PS50293	PGSC:PGSC0003DMG400000618	RefSeq:XP_006364214.1	SEG:seg	SUPFAM:SSF48452
UniParc:UPI000294AFE2	UniProt:M0ZIV9	MapMan:35.2	:	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400000618]

Coordinates

chr3:+:56468452..56470701

Molecular Weight (calculated)

34372.7 Da

IEP (calculated)

5.268

GRAVY (calculated)

-0.736

Length

320 amino acids

Sequence
(BLAST)

001: MLLRSSSTPL LNSWKPKPCG SSPESDLLPI TTQQLNRTRS VLMSTSFGPD ETPAKHTSPT KHAPNRCMCE LDPRDPAVPK KNKNGTKREA KTPKLKNNEV
101: GSTEVRRLLS NSGLGNAEEE ASVAVEEKGR VLQSLVAGGV GGGGGGGKVC GGGGSGGSDG GDGSDSQDSN SWHGPDNIDA YYQKMIEAHP GNGLLLANYA
201: RFLKEVRADL EKAEEYCGRA ILANPNDGYA LSLYAELIWQ TQKDAARAHT YFDRAVKSDP DDCYVLGSYA RFLWDAGEEY ENEGEEDELS RQFGIQHENS
301: GPAQNFFGAP SHRPPLAAAS

Best Arabidopsis Sequence Match ( AT1G80130.1 )
(BLAST)

001: MLLRSTSAPI LNSWLPQHCS RESSPEPESQ LWRRSTSLSL FSSKSIDGHT GEQLHQALSD NKEIIILKSK SNEHSYKTPT SSRQRRSSLD ETRYTKKTLD
101: RSSPFLVERL FSSSGQGDKA SSNDRLETLV SGGGGGMGGS GGNICNGGGG VGGSGVDGGR SEDATDTYYR EMIDSNPGNS LLTGNYAKFL KEVKGDMKKA
201: EEYCERAILG NTNDGNVLSL YADLILHNHQ DRQRAHSYYK QAVKMSPEDC YVQASYARFL WDVDEDEEDE ALGEEEENLS DETGHVPPTT MFRDFPQHTS
301: ITASS

Arabidopsis Description

F18B13.21 protein [Source:UniProtKB/TrEMBL;Acc:Q9SSC6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.