Factsheet for PGSC0003DMT400073455

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
mitochondrion 3
cytosol 1
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g068130.2.1	Tomato	plastid	90.8	90.42
GSMUA_Achr2P15930_001	Banana	cytosol	24.27	48.33
KRH09728	Soybean	cytosol	22.18	46.9
PGSC0003DMT400079441	Potato	plastid	38.91	40.09
PGSC0003DMT400001660	Potato	mitochondrion, nucleus, plastid	48.95	36.56
CDX75237	Canola	plastid	37.66	36.29
Bra011339.1-P	Field mustard	plastid	36.4	35.66
CDX68837	Canola	mitochondrion, plastid	37.24	35.6
AT4G32340.1	Thale cress	mitochondrion	35.15	35.29
KRH23575	Soybean	plastid	37.24	34.63
Os06t0606700-00	Rice	plastid	37.24	32.01
AT1G80130.1	Thale cress	nucleus	40.59	31.8
Bra008495.1-P	Field mustard	mitochondrion, nucleus	39.33	31.13
HORVU7Hr1G090280.1	Barley	mitochondrion	37.24	30.9
CDX87295	Canola	nucleus	32.64	30.83
Bra035194.1-P	Field mustard	nucleus	38.91	30.39
CDY39992	Canola	nucleus	38.49	30.07
TraesCS7B01G279400.1	Wheat	mitochondrion	36.82	30.03
TraesCS7A01G377700.1	Wheat	mitochondrion	35.98	29.97
KRH44461	Soybean	plastid	39.33	29.84
TraesCS7D01G374500.1	Wheat	mitochondrion	35.15	29.68
CDY41120	Canola	mitochondrion	38.08	29.64
CDY37568	Canola	nucleus	38.91	29.62
KRH47446	Soybean	plastid	38.49	29.21
Zm00001d046530_P001	Maize	plastid	35.98	28.96
EER88623	Sorghum	mitochondrion	35.56	26.56
PGSC0003DMT400045174	Potato	plastid	33.05	26.16
Os04t0496700-00	Rice	nucleus	21.34	24.76
Os07t0542800-00	Rice	cytosol, mitochondrion, nucleus, plastid	21.76	21.14
PGSC0003DMT400022129	Potato	plastid	29.71	19.72
PGSC0003DMT400003940	Potato	nucleus	22.18	13.18
PGSC0003DMT400078227	Potato	plastid	25.1	10.85
PGSC0003DMT400069757	Potato	plastid	20.08	10.74
PGSC0003DMT400035002	Potato	plastid	27.2	9.18

Protein Annotations

EnsemblPlants:PGSC0003DMT400073455	EnsemblPlantsGene:PGSC0003DMG400028535	EntrezGene:102597244	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR011990	InterPro:IPR013026	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR26312
PANTHER:PTHR26312:SF75	PFscan:PS50293	PGSC:PGSC0003DMG400028535	RefSeq:XP_006356215.1	SEG:seg	SUPFAM:SSF48452
UniParc:UPI000295E4B6	UniProt:M1CS16	MapMan:35.2	:	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400028535]

Coordinates

chr6:+:49794788..49797823

Molecular Weight (calculated)

26612.5 Da

IEP (calculated)

4.765

GRAVY (calculated)

-0.744

Length

239 amino acids

Sequence
(BLAST)

001: MLLRSSSSSS CILNSWISNV RTPLSTSIQL NYDENYCYCN MREMDGPDHK KNNNHMNKIN IRNSYSNIEL SSSTYNDEVK TTEDYCAAPE DGGGGKVYNG
101: GRWTGGGGGG DDSGSGSGSG SDDSNGWHGN ENTEAYYKKM IKTYPRNALL LANYARFLKE VKGDLVKAEE YCGRAVVVNP RDGNVLSLYA DLIWLTQKDA
201: SRANAYFDQA VKFDPHDCYV VASYARFLWD AEETEEELK

Best Arabidopsis Sequence Match ( AT5G20190.1 )
(BLAST)

001: MLLRSASTPL LNSLVHVSSP RDSPIETVES VHQIQRHRSI TLSASSSSCC YSPMSVHSSD DSSRRMKRTA SDSDLRHLTS TKPPVSKFLS GGALMEDVDE
101: GIGFGLIRTS SYDGISWALD EDTEVAGGGG GGMFHGGGKG RSGGRSDGGD GGDDNTDVHY RKMIEANPGN GIFLSNYAKF LKEVRKDYLK AEEYCGRAIL
201: VSPNDGNVLA MYAELVWKIH KDSSRAENYF NQAVAAAPED CYVQASYARF LWDAEEEEEE EKEERHEEEL EHQTSRMNFF TGPSPITAMS

Arabidopsis Description

Tetratricopeptide repeat (TPR)-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4K464]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.