CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
cytosol 1
mitochondrion 3
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra008495.1-P	Field mustard	mitochondrion, nucleus	93.81	95.36
CDY37568	Canola	nucleus	95.44	93.31
CDX87295	Canola	nucleus	62.87	76.28
CDY39992	Canola	nucleus	75.24	75.49
AT1G80130.1	Thale cress	nucleus	68.73	69.18
GSMUA_Achr2P15930_001	Banana	cytosol	19.22	49.17
KRH09728	Soybean	cytosol	16.29	44.25
KRH23575	Soybean	plastid	36.48	43.58
CDX92483	Canola	plastid	35.5	38.93
PGSC0003DMT400073455	Potato	plastid	29.64	38.08
CDX88849	Canola	plastid	33.22	37.92
CDX75237	Canola	plastid	30.62	37.9
CDY45101	Canola	plastid	34.85	37.81
CDY60380	Canola	plastid	32.9	37.69
CDX68837	Canola	mitochondrion, plastid	30.62	37.6
Solyc06g068130.2.1	Tomato	plastid	29.32	37.5
KRH47446	Soybean	plastid	38.44	37.46
CDY35827	Canola	plastid	35.5	37.46
KRH44461	Soybean	plastid	38.11	37.14
PGSC0003DMT400001660	Potato	mitochondrion, nucleus, plastid	37.13	35.62
Solyc03g116670.2.1	Tomato	nucleus	34.85	33.97
CDX78813	Canola	mitochondrion	23.45	31.44
Zm00001d046530_P001	Maize	plastid	29.64	30.64
Os06t0606700-00	Rice	plastid	27.69	30.58
HORVU7Hr1G090280.1	Barley	mitochondrion	28.01	29.86
TraesCS7D01G374500.1	Wheat	mitochondrion	27.04	29.33
TraesCS7A01G377700.1	Wheat	mitochondrion	27.36	29.27
CDY44501	Canola	mitochondrion	22.48	28.4
TraesCS7B01G279400.1	Wheat	mitochondrion	27.04	28.33
EER88623	Sorghum	mitochondrion	28.99	27.81
CDY08881	Canola	plastid	22.8	26.92
CDX76550	Canola	plastid	22.15	25.86
CDY02002	Canola	cytosol, mitochondrion, nucleus	11.73	23.68
Os04t0496700-00	Rice	nucleus	15.64	23.3
CDY18241	Canola	nucleus	19.22	20.34
CDY59180	Canola	cytosol	11.73	20.34
CDX89816	Canola	nucleus	18.89	19.93
Os07t0542800-00	Rice	cytosol, mitochondrion, nucleus, plastid	14.98	18.7
CDY51354	Canola	plastid	16.94	10.79
CDX97868	Canola	plastid	17.59	10.76
CDX99068	Canola	plastid	15.96	10.7
CDY06694	Canola	plastid	17.59	10.51
CDY09927	Canola	plastid	16.94	10.51
CDY06247	Canola	plastid	16.61	10.3
CDX86126	Canola	plastid	16.29	10.29
CDY10264	Canola	plastid	17.26	10.25
CDY38075	Canola	plastid	13.36	9.67
CDY58299	Canola	plastid	13.68	8.66

Protein Annotations

EnsemblPlants:CDY41120	EnsemblPlantsGene:GSBRNA2T00072469001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR011990	InterPro:TPR-like_helical_dom_sf	ncoils:Coil	PANTHER:PTHR26312	PANTHER:PTHR26312:SF75	ProteinID:CDY41120
ProteinID:CDY41120.1	SEG:seg	SUPFAM:SSF48452	UniParc:UPI0004EEF19B	UniProt:A0A078HRC7	MapMan:35.2

Description

BnaC05g11110DBnaC05g11110D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HRC7]

Coordinates

chrLK032490:-:217108..223719

Molecular Weight (calculated)

34256.5 Da

IEP (calculated)

4.825

GRAVY (calculated)

-0.758

Length

307 amino acids

Sequence
(BLAST)

001: MLLRTTSAPI LNSWLQQHCS RESSPEPESL LQPRNRSLSL LASKSIDEHT GEILHQAFSE HRESVLKSSY NVHDSSNVLP RKQRRSSLDE SSHGTAYNGK
101: ILDPSSNLLT ERLFSGSRLG EKVSDVEDHP EALVMGGGGG MGSSGVKICN GGDDSGRSGS EDATDVYYRE MINLTPGNSL LTGNYAKFLK EVRGDLKKAE
201: EYCERAILGN TNDGNILSLY ADLILHNHGD RKRAHSYFQQ AAKMSPEDCY VQASYARFLW DVEDDEYEEE EEAEEEEKEQ LSDEIGHIPP TTIFRDFPKH
301: ARISTTS

Best Arabidopsis Sequence Match ( AT1G80130.1 )
(BLAST)

001: MLLRSTSAPI LNSWLPQHCS RESSPEPESQ LWRRSTSLSL FSSKSIDGHT GEQLHQALSD NKEIIILKSK SNEHSYKTPT SSRQRRSSLD ETRYTKKTLD
101: RSSPFLVERL FSSSGQGDKA SSNDRLETLV SGGGGGMGGS GGNICNGGGG VGGSGVDGGR SEDATDTYYR EMIDSNPGNS LLTGNYAKFL KEVKGDMKKA
201: EEYCERAILG NTNDGNVLSL YADLILHNHQ DRQRAHSYYK QAVKMSPEDC YVQASYARFL WDVDEDEEDE ALGEEEENLS DETGHVPPTT MFRDFPQHTS
301: ITASS

Arabidopsis Description

F18B13.21 protein [Source:UniProtKB/TrEMBL;Acc:Q9SSC6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.