CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra020090.1-P	Field mustard	cytosol	66.43	96.91
CDX92483	Canola	plastid	80.21	81.07
CDY35827	Canola	plastid	81.27	79.04
CDY60380	Canola	plastid	74.56	78.73
AT5G20190.1	Thale cress	plastid	79.86	77.93
CDX88849	Canola	plastid	73.14	76.95
GSMUA_Achr2P15930_001	Banana	cytosol	24.38	57.5
KRH20249	Soybean	plastid	44.88	49.42
KRH03683	Soybean	plastid	44.17	47.89
VIT_11s0016g05430.t01	Wine grape	plastid	44.52	43.75
VIT_09s0002g06810.t01	Wine grape	cytosol	45.58	42.16
PGSC0003DMT400079441	Potato	plastid	32.16	39.22
Solyc07g008210.2.1	Tomato	cytosol, nucleus, plastid	31.8	39.13
TraesCS7A01G377700.1	Wheat	mitochondrion	38.87	38.33
HORVU7Hr1G090280.1	Barley	mitochondrion	38.87	38.19
TraesCS7D01G374500.1	Wheat	mitochondrion	38.16	38.16
Os06t0606700-00	Rice	plastid	37.46	38.13
CDX75237	Canola	plastid	33.22	37.9
CDX68837	Canola	mitochondrion, plastid	32.86	37.2
TraesCS7B01G279400.1	Wheat	mitochondrion	38.16	36.86
CDY39992	Canola	nucleus	39.58	36.6
CDX87295	Canola	nucleus	32.16	35.97
CDX78813	Canola	mitochondrion	28.98	35.81
Zm00001d046530_P001	Maize	plastid	37.46	35.69
CDY37568	Canola	nucleus	39.58	35.67
CDY41120	Canola	mitochondrion	37.81	34.85
EER88623	Sorghum	mitochondrion	37.81	33.44
CDY44501	Canola	mitochondrion	27.56	32.1
CDY08881	Canola	plastid	28.62	31.15
CDX76550	Canola	plastid	28.27	30.42
CDY02002	Canola	cytosol, mitochondrion, nucleus	14.84	27.63
Os04t0496700-00	Rice	nucleus	19.43	26.7
Os07t0542800-00	Rice	cytosol, mitochondrion, nucleus, plastid	19.79	22.76
CDY18241	Canola	nucleus	22.61	22.07
CDX89816	Canola	nucleus	21.91	21.31
CDY59180	Canola	cytosol	12.72	20.34
CDY51354	Canola	plastid	25.09	14.73
CDX97868	Canola	plastid	25.44	14.34
CDY09927	Canola	plastid	22.26	12.73
CDY06247	Canola	plastid	22.26	12.73
CDX99068	Canola	plastid	20.49	12.66
CDY10264	Canola	plastid	22.61	12.38
CDY06694	Canola	plastid	22.26	12.26
CDX86126	Canola	plastid	20.85	12.14
CDY38075	Canola	plastid	16.96	11.32
CDY58299	Canola	plastid	18.73	10.93

Protein Annotations

EnsemblPlants:CDY45101	EnsemblPlantsGene:GSBRNA2T00081384001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR011990	InterPro:IPR013026	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR26312	PANTHER:PTHR26312:SF75
PFscan:PS50293	ProteinID:CDY45101	ProteinID:CDY45101.1	SEG:seg	SUPFAM:SSF48452	UniParc:UPI0004EF3D17
UniProt:A0A078I5E0	MapMan:35.2	:	:	:	:

Description

BnaA02g04750DBnaA02g04750D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I5E0]

Coordinates

chrLK032613:-:192859..194254

Molecular Weight (calculated)

30860.8 Da

IEP (calculated)

4.566

GRAVY (calculated)

-0.494

Length

283 amino acids

Sequence
(BLAST)

001: MLLRSASTPL LNSLVHVSTP KESPNEAVDQ RPRSLVLSSP SSCCYSPMSI HSSDETTRRV KRTASESDLR HLTTTKPPSS KFLNSAALME DVEEGIGFGI
101: IRTSSYDGGL AFWTLEEETE VSSGGGGGGG IVHGGGKGGS DGDDSTDVHY RKMIEANPGN GMFLGNYAKF LKEVRKDYLR AEEYCGRAIL VNPNDGNVLA
201: MYAELVWMIH KDSSRAESYF NQAVAAAPDD CYVQASYARF LWDADEEEEG GEGEKEERHE EELVTQASRM SFFTGLSPIT AMS

Best Arabidopsis Sequence Match ( AT5G20190.1 )
(BLAST)

001: MLLRSASTPL LNSLVHVSSP RDSPIETVES VHQIQRHRSI TLSASSSSCC YSPMSVHSSD DSSRRMKRTA SDSDLRHLTS TKPPVSKFLS GGALMEDVDE
101: GIGFGLIRTS SYDGISWALD EDTEVAGGGG GGMFHGGGKG RSGGRSDGGD GGDDNTDVHY RKMIEANPGN GIFLSNYAKF LKEVRKDYLK AEEYCGRAIL
201: VSPNDGNVLA MYAELVWKIH KDSSRAENYF NQAVAAAPED CYVQASYARF LWDAEEEEEE EKEERHEEEL EHQTSRMNFF TGPSPITAMS

Arabidopsis Description

Tetratricopeptide repeat (TPR)-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4K464]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.