CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 5
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra013269.1-P	Field mustard	mitochondrion	97.82	97.82
CDY44501	Canola	mitochondrion	89.96	84.77
CDY08881	Canola	plastid	77.73	68.46
CDX76550	Canola	plastid	78.17	68.06
AT4G17940.1	Thale cress	mitochondrion	77.29	64.6
VIT_02s0012g01590.t01	Wine grape	nucleus	48.03	51.16
KRH39558	Soybean	plastid	47.16	42.69
Solyc08g076730.2.1	Tomato	plastid	55.9	42.38
PGSC0003DMT400045174	Potato	plastid	55.02	41.72
GSMUA_Achr4P27320_001	Banana	plastid	47.6	41.13
GSMUA_Achr5P03500_001	Banana	plastid	44.54	40.96
TraesCS1A01G194200.1	Wheat	plastid	41.05	39.83
TraesCS1B01G209200.1	Wheat	plastid	41.05	39.66
KRH74400	Soybean	nucleus, plastid	49.34	38.83
Os10t0576600-01	Rice	plastid	34.93	35.24
Zm00001d030086_P001	Maize	plastid	36.68	33.73
CDX75237	Canola	plastid	34.06	31.45
EER91874	Sorghum	plastid	35.37	31.4
CDX68837	Canola	mitochondrion, plastid	34.06	31.2
CDY60380	Canola	plastid	34.06	29.1
CDX88849	Canola	plastid	34.06	29.0
CDY45101	Canola	plastid	35.81	28.98
CDX92483	Canola	plastid	34.5	28.21
CDY35827	Canola	plastid	34.5	27.15
CDY02002	Canola	cytosol, mitochondrion, nucleus	17.03	25.66
CDX87295	Canola	nucleus	26.64	24.11
CDY39992	Canola	nucleus	31.44	23.53
CDY41120	Canola	mitochondrion	31.44	23.45
CDY18241	Canola	nucleus	28.82	22.76
CDX89816	Canola	nucleus	28.38	22.34
CDY37568	Canola	nucleus	30.57	22.29
CDY59180	Canola	cytosol	16.59	21.47
HORVU1Hr1G050780.2	Barley	plastid	33.19	19.95
CDY51354	Canola	plastid	24.89	11.83
CDX97868	Canola	plastid	25.76	11.75
CDY06247	Canola	plastid	24.89	11.52
CDY09927	Canola	plastid	24.02	11.11
CDY06694	Canola	plastid	24.89	11.09
CDY10264	Canola	plastid	24.45	10.83
CDX99068	Canola	plastid	19.21	9.61
CDX86126	Canola	plastid	20.09	9.47
CDY58299	Canola	plastid	19.21	9.07
CDY38075	Canola	plastid	15.72	8.49

Protein Annotations

EnsemblPlants:CDX78813	EnsemblPlantsGene:GSBRNA2T00131283001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR011990	InterPro:IPR013026	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR26312	PANTHER:PTHR26312:SF53
PFscan:PS50293	ProteinID:CDX78813	ProteinID:CDX78813.1	SEG:seg	SUPFAM:SSF48452	UniParc:UPI0004EE5378
MapMan:35.2	:	:	:	:	:

Description

BnaA01g08800D

Coordinates

chrLK031816:+:210857..211714

Molecular Weight (calculated)

25222.5 Da

IEP (calculated)

4.496

GRAVY (calculated)

-0.616

Length

229 amino acids

Sequence
(BLAST)

001: MKSLLMRTGS MPVQTRFIPT TISRHNSVES LSTNGDRFSA GKISIDAKSA AGMRRALSES DVIRSERMSK SVVGSKPSPA RIPEEDEQGF SGGGGGGGGS
101: GFSGGYEDRR KIGDYYREML KSNPNSSLLL MNYGKFLYEV KENLERAEEY YGRAILADPG DGEALSMYGK LIWETKRDEE RAQCYFDQAV NASPDDCMVL
201: GSYAHFMWEA EDDDEEEEEL MVGASPALV

Best Arabidopsis Sequence Match ( AT4G17940.1 )
(BLAST)

001: MKSLLMRTGS MPVLQNRLIS GGSSRKMTPI SRTNSVESLS SYGERFAGGK ISIEVKANVG MRRVLSESDV IRSERMLKRV GSKPSPARIP EDDEAGEEEI
101: RFADGWGSMI SGGLPVEEKC FTGGGVGGGS GYSGGYGNGG GGGYEDKSKI GDYYREMLRS NPNNSLLLMN YGKFLYEVEK DAEGAEEYYG RAILENPGDG
201: EALSMYGRLI WETKRDEKRA QGYFDQAVNA SPNDCMVLGS YARFMWEAED DDDDDEEEEE EEWMAASPLM VSAV

Arabidopsis Description

Tetratricopeptide repeat (TPR)-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q0WUZ1]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.