Factsheet for Zm00001d030086_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER91874	Sorghum	plastid	83.13	80.23
TraesCS1A01G194200.1	Wheat	plastid	59.84	63.14
TraesCS1B01G209200.1	Wheat	plastid	58.63	61.6
Os10t0576600-01	Rice	plastid	54.62	59.91
GSMUA_Achr5P03500_001	Banana	plastid	40.16	40.16
GSMUA_Achr4P27320_001	Banana	plastid	40.96	38.49
Bra013269.1-P	Field mustard	mitochondrion	34.14	37.12
CDX78813	Canola	mitochondrion	33.73	36.68
CDY44501	Canola	mitochondrion	33.73	34.57
HORVU1Hr1G050780.2	Barley	plastid	52.21	34.12
VIT_02s0012g01590.t01	Wine grape	nucleus	28.51	33.02
CDY08881	Canola	plastid	34.14	32.69
CDX76550	Canola	plastid	34.14	32.32
AT4G17940.1	Thale cress	mitochondrion	35.34	32.12
KRH39558	Soybean	plastid	32.53	32.02
Bra021028.1-P	Field mustard	plastid	33.73	31.94
Solyc08g076730.2.1	Tomato	plastid	37.75	31.13
PGSC0003DMT400045174	Potato	plastid	36.55	30.13
KRH74400	Soybean	nucleus, plastid	32.53	27.84
Zm00001d046530_P001	Maize	plastid	32.53	27.27
Zm00001d003035_P001	Maize	plastid	25.3	22.66
Zm00001d027613_P002	Maize	plastid	28.11	19.66
Zm00001d032535_P002	Maize	plastid	18.47	12.89
Zm00001d013919_P001	Maize	plastid	17.67	12.12
Zm00001d012325_P001	Maize	plastid	20.88	10.08
Zm00001d042812_P001	Maize	plastid	20.08	9.56
Zm00001d038274_P002	Maize	plastid	18.88	9.36
Zm00001d010075_P001	Maize	plastid	19.68	9.33

Protein Annotations

EMBL:BT035811	EnsemblPlants:Zm00001d030086_P001	EnsemblPlants:Zm00001d030086_T001	EnsemblPlantsGene:Zm00001d030086	Gene3D:1.25.40.10	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR011990	InterPro:IPR013026	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf
PANTHER:PTHR26312	PANTHER:PTHR26312:SF53	PFscan:PS50293	ProteinID:ONM00142.1	SEG:seg	SUPFAM:SSF48452
UniParc:UPI00017B6ECA	UniProt:B4FFC3	MapMan:35.2	:	:	:

Description

Tetratricopeptide repeat (TPR)-like superfamily protein

Coordinates

chr1:-:104416569..104417982

Molecular Weight (calculated)

26222.5 Da

IEP (calculated)

5.384

GRAVY (calculated)

-0.387

Length

249 amino acids

Sequence
(BLAST)

001: MEATAATLSR SASLSAGRPH RSRTARFPPP PPHLTPLSAA ASPRGLPLRR ARSDAEVAYF ARSAVLVRHA PIPAIIVADE EERQDDNSKA PAGLDGAGAG
101: RNGSSHRGGS GGRGGGGGGG GCDMGEYYRR VLRVDPGNPL LLRNYGKYLH EVERDLAGAE GCYARALLAC PGDADLLSLY GRVIWEARQE KDRAAAYFER
201: AVQAAPDDCY VLGSYASFLW DAEDDDEETG TPAVDVVASC DSPALVPAC

Best Arabidopsis Sequence Match ( AT4G17940.1 )
(BLAST)

001: MKSLLMRTGS MPVLQNRLIS GGSSRKMTPI SRTNSVESLS SYGERFAGGK ISIEVKANVG MRRVLSESDV IRSERMLKRV GSKPSPARIP EDDEAGEEEI
101: RFADGWGSMI SGGLPVEEKC FTGGGVGGGS GYSGGYGNGG GGGYEDKSKI GDYYREMLRS NPNNSLLLMN YGKFLYEVEK DAEGAEEYYG RAILENPGDG
201: EALSMYGRLI WETKRDEKRA QGYFDQAVNA SPNDCMVLGS YARFMWEAED DDDDDEEEEE EEWMAASPLM VSAV

Arabidopsis Description

Tetratricopeptide repeat (TPR)-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q0WUZ1]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.