CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 3
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH74400	Soybean	nucleus, plastid	88.14	76.63
VIT_02s0012g01590.t01	Wine grape	nucleus	43.87	51.63
Bra013269.1-P	Field mustard	mitochondrion	43.48	48.03
CDX78813	Canola	mitochondrion	42.69	47.16
CDY44501	Canola	mitochondrion	42.29	44.03
CDY08881	Canola	plastid	43.08	41.92
PGSC0003DMT400045174	Potato	plastid	49.8	41.72
GSMUA_Achr4P27320_001	Banana	plastid	43.48	41.51
Solyc08g076730.2.1	Tomato	plastid	49.41	41.39
AT4G17940.1	Thale cress	mitochondrion	44.66	41.24
CDX76550	Canola	plastid	42.29	40.68
Bra021028.1-P	Field mustard	plastid	41.9	40.3
GSMUA_Achr5P03500_001	Banana	plastid	39.13	39.76
Os10t0576600-01	Rice	plastid	35.18	39.21
KRH09728	Soybean	cytosol	17.39	38.94
TraesCS1A01G194200.1	Wheat	plastid	35.97	38.56
TraesCS1B01G209200.1	Wheat	plastid	34.78	37.13
KRH20249	Soybean	plastid	35.18	34.63
KRH03683	Soybean	plastid	35.18	34.1
EER91874	Sorghum	plastid	33.6	32.95
Zm00001d030086_P001	Maize	plastid	32.02	32.53
KRH23575	Soybean	plastid	29.64	29.18
KRG95736	Soybean	cytosol, nucleus, plastid	23.32	27.7
KRH44461	Soybean	plastid	33.2	26.67
KRH47446	Soybean	plastid	30.43	24.44
KRH67454	Soybean	nucleus	31.23	22.13
HORVU1Hr1G050780.2	Barley	plastid	31.62	21.0
KRH34549	Soybean	nucleus	19.76	12.79
KRG92250	Soybean	cytosol	18.97	12.4
KRG98335	Soybean	plastid	23.72	11.28
KRH46437	Soybean	plastid	22.92	11.05
KRH73162	Soybean	mitochondrion	20.16	10.58
KRH14978	Soybean	cytosol, plastid	19.37	10.27

Protein Annotations

EMBL:ACUP02005943	EnsemblPlants:KRH39558	EnsemblPlantsGene:GLYMA_09G205800	EntrezGene:100809078	Gene3D:1.25.40.10	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR011990	InterPro:IPR013026	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf
PANTHER:PTHR26312	PANTHER:PTHR26312:SF53	PFscan:PS50293	ProteinID:KRH39558	ProteinID:KRH39558.1	SEG:seg
SUPFAM:SSF48452	UniParc:UPI0002337E65	UniProt:I1L4Y2	MapMan:35.2	:	:

Description

hypothetical protein

Coordinates

chr9:+:42988926..42990302

Molecular Weight (calculated)

27985.6 Da

IEP (calculated)

5.069

GRAVY (calculated)

-0.577

Length

253 amino acids

Sequence
(BLAST)

001: MRASLIRTGS VPVQNTLLPA SPRVSLTRQA SFAAADKSLA HSPRLSMHSS HSNPRRFSSE RDGENFGVRR DLNRTGSRSF PPIVPHEEEF LSDAAPRKLG
101: IRPEDLRFGG GDGGDNGGTC LTGGNGREWM KIGAYYEEML RSNPTDALLL RNYGKFLHEV EKDTARAEEY YGRAILANPG DGELLSLYGT LIWETQRDED
201: RAKSYFDQAI HAAPNDCTVL GSYAHFMWEA EEEEEVVNGG VTEITATEMI AAF

Best Arabidopsis Sequence Match ( AT4G17940.1 )
(BLAST)

001: MKSLLMRTGS MPVLQNRLIS GGSSRKMTPI SRTNSVESLS SYGERFAGGK ISIEVKANVG MRRVLSESDV IRSERMLKRV GSKPSPARIP EDDEAGEEEI
101: RFADGWGSMI SGGLPVEEKC FTGGGVGGGS GYSGGYGNGG GGGYEDKSKI GDYYREMLRS NPNNSLLLMN YGKFLYEVEK DAEGAEEYYG RAILENPGDG
201: EALSMYGRLI WETKRDEKRA QGYFDQAVNA SPNDCMVLGS YARFMWEAED DDDDDEEEEE EEWMAASPLM VSAV

Arabidopsis Description

Tetratricopeptide repeat (TPR)-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q0WUZ1]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.