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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion

Predictor Summary:
  • plastid 3
  • mitochondrion 5
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:mitochondrion
Any Predictor:cytosol, mitochondrion, plastid
BaCelLo:plastid
ChloroP:plastid
iPSORT:mitochondrion
MultiLoc:cytosol
Predotar:mitochondrion
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:plastid
YLoc:mitochondrion
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY44501 Canola mitochondrion 70.44 79.42
Bra013269.1-P Field mustard mitochondrion 65.33 78.17
CDY08881 Canola plastid 73.36 77.31
CDX78813 Canola mitochondrion 64.6 77.29
CDX76550 Canola plastid 74.09 77.19
Bra021028.1-P Field mustard plastid 73.72 76.81
VIT_02s0012g01590.t01 Wine grape nucleus 41.97 53.49
KRH39558 Soybean plastid 41.24 44.66
Solyc08g076730.2.1 Tomato plastid 48.54 44.04
GSMUA_Achr4P27320_001 Banana plastid 41.97 43.4
PGSC0003DMT400045174 Potato plastid 47.45 43.05
GSMUA_Achr5P03500_001 Banana plastid 36.86 40.56
KRH74400 Soybean nucleus, plastid 41.97 39.52
Os10t0576600-01 Rice plastid 32.48 39.21
TraesCS1A01G194200.1 Wheat plastid 33.58 38.98
TraesCS1B01G209200.1 Wheat plastid 33.58 38.82
Zm00001d030086_P001 Maize plastid 32.12 35.34
AT4G32340.1 Thale cress mitochondrion 29.2 33.61
EER91874 Sorghum plastid 30.66 32.56
AT5G20190.1 Thale cress plastid 32.85 31.03
AT1G80130.1 Thale cress nucleus 29.2 26.23
AT1G04530.1 Thale cress cytoskeleton, cytosol, nucleus 26.28 23.23
HORVU1Hr1G050780.2 Barley plastid 28.1 20.21
AT2G29670.2 Thale cress plastid 24.09 12.31
AT1G07280.1 Thale cress plastid 20.8 10.33
AT3G47080.1 Thale cress plastid 17.15 9.13
Protein Annotations
Gene3D:1.25.40.10MapMan:35.2EntrezGene:827519ProteinID:AEE83970.1EMBL:AK226990ArrayExpress:AT4G17940
EnsemblPlantsGene:AT4G17940RefSeq:AT4G17940TAIR:AT4G17940RefSeq:AT4G17940-TAIR-GEnsemblPlants:AT4G17940.1TAIR:AT4G17940.1
Unigene:At.43075GO:GO:0003674GO:GO:0005488GO:GO:0005515GO:GO:0008150InterPro:IPR011990
InterPro:IPR013026RefSeq:NP_567545.1PO:PO:0000013PO:PO:0000037PO:PO:0000230PO:PO:0000293
PO:PO:0001016PO:PO:0001017PO:PO:0001054PO:PO:0001078PO:PO:0001081PO:PO:0001185
PO:PO:0004507PO:PO:0007064PO:PO:0007095PO:PO:0007098PO:PO:0007103PO:PO:0007115
PO:PO:0007123PO:PO:0007611PO:PO:0007616PO:PO:0008019PO:PO:0009005PO:PO:0009006
PO:PO:0009009PO:PO:0009010PO:PO:0009025PO:PO:0009029PO:PO:0009030PO:PO:0009031
PO:PO:0009032PO:PO:0009046PO:PO:0009047PO:PO:0009052PO:PO:0020030PO:PO:0020038
PO:PO:0020100PO:PO:0020137PO:PO:0025022PO:PO:0025195PO:PO:0025281PFscan:PS50293
PANTHER:PTHR26312PANTHER:PTHR26312:SF53UniProt:Q0WUZ1SUPFAM:SSF48452InterPro:TPR-contain_domInterPro:TPR-like_helical_dom_sf
UniParc:UPI0000162AADSEG:seg::::
Description
Tetratricopeptide repeat (TPR)-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q0WUZ1]
Coordinates
chr4:+:9965742..9967013
Molecular Weight (calculated)
30077.1 Da
IEP (calculated)
4.315
GRAVY (calculated)
-0.650
Length
274 amino acids
Sequence
(BLAST)
001: MKSLLMRTGS MPVLQNRLIS GGSSRKMTPI SRTNSVESLS SYGERFAGGK ISIEVKANVG MRRVLSESDV IRSERMLKRV GSKPSPARIP EDDEAGEEEI
101: RFADGWGSMI SGGLPVEEKC FTGGGVGGGS GYSGGYGNGG GGGYEDKSKI GDYYREMLRS NPNNSLLLMN YGKFLYEVEK DAEGAEEYYG RAILENPGDG
201: EALSMYGRLI WETKRDEKRA QGYFDQAVNA SPNDCMVLGS YARFMWEAED DDDDDEEEEE EEWMAASPLM VSAV
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.