Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 7
- mitochondrion 1
- nucleus 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY02002 | Canola | cytosol, mitochondrion, nucleus | 23.51 | 82.89 |
| Bra018368.1-P | Field mustard | plastid | 68.28 | 78.37 |
| CDX97868 | Canola | plastid | 72.39 | 77.29 |
| CDY51354 | Canola | plastid | 69.22 | 76.97 |
| Bra039995.1-P | Field mustard | plastid | 69.59 | 76.75 |
| AT1G07280.1 | Thale cress | plastid | 66.98 | 65.04 |
| VIT_06s0004g06290.t01 | Wine grape | plastid | 58.96 | 59.74 |
| KRG98335 | Soybean | plastid | 54.85 | 55.26 |
| KRH46437 | Soybean | plastid | 53.36 | 54.48 |
| Solyc06g076850.2.1 | Tomato | plastid | 54.85 | 53.36 |
| PGSC0003DMT400078227 | Potato | plastid | 54.66 | 52.98 |
| GSMUA_Achr8P02280_001 | Banana | plastid | 44.78 | 48.0 |
| AT3G47080.1 | Thale cress | plastid | 45.52 | 47.38 |
| GSMUA_Achr9P03650_001 | Banana | plastid | 44.59 | 47.14 |
| Os01t0855200-01 | Rice | plastid | 43.28 | 45.31 |
| TraesCS3A01G368600.1 | Wheat | plastid | 40.49 | 45.11 |
| TraesCS3B01G400100.1 | Wheat | plastid | 40.3 | 45.09 |
| TraesCS3D01G361500.1 | Wheat | plastid | 40.3 | 45.0 |
| HORVU3Hr1G084970.2 | Barley | plastid | 40.49 | 44.93 |
| GSMUA_Achr11P... | Banana | plastid | 41.6 | 44.69 |
| GSMUA_Achr6P33690_001 | Banana | plastid | 44.22 | 44.38 |
| Os05t0447700-01 | Rice | plastid | 39.93 | 44.21 |
| TraesCS1B01G287500.1 | Wheat | plastid | 39.18 | 43.84 |
| TraesCS1D01G277900.1 | Wheat | plastid | 38.62 | 43.67 |
| TraesCS1A01G278600.1 | Wheat | plastid | 38.25 | 43.62 |
| Zm00001d012325_P001 | Maize | plastid | 41.98 | 43.6 |
| Zm00001d042812_P001 | Maize | plastid | 41.79 | 42.83 |
| EES01775 | Sorghum | plastid | 41.6 | 42.08 |
| KXG22120 | Sorghum | plastid | 39.55 | 41.57 |
| Zm00001d038274_P002 | Maize | plastid | 38.62 | 41.24 |
| HORVU1Hr1G073460.2 | Barley | plastid | 38.25 | 40.04 |
| Zm00001d010075_P001 | Maize | plastid | 38.99 | 39.81 |
| GSMUA_Achr5P28840_001 | Banana | cytosol | 39.93 | 38.15 |
| AT4G17940.1 | Thale cress | mitochondrion | 12.31 | 24.09 |
| AT4G32340.1 | Thale cress | mitochondrion | 10.63 | 23.95 |
| AT5G20190.1 | Thale cress | plastid | 12.31 | 22.76 |
| AT1G80130.1 | Thale cress | nucleus | 11.19 | 19.67 |
| AT1G04530.1 | Thale cress | cytoskeleton, cytosol, nucleus | 10.26 | 17.74 |
Protein Annotations
| Gene3D:1.25.40.10 | MapMan:35.2 | EntrezGene:817517 | UniProt:A0A178VVG6 | ProteinID:AAC35237.2 | ProteinID:AEC08290.1 |
| EMBL:AF375460 | ProteinID:ANM63162.1 | ArrayExpress:AT2G29670 | EnsemblPlantsGene:AT2G29670 | RefSeq:AT2G29670 | TAIR:AT2G29670 |
| RefSeq:AT2G29670-TAIR-G | EnsemblPlants:AT2G29670.2 | EMBL:AY074336 | EMBL:AY096656 | Unigene:At.28743 | EMBL:BT000642 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0006139 | GO:GO:0006396 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 | InterPro:HAT |
| InterPro:IPR011990 | InterPro:IPR013026 | InterPro:IPR019734 | RefSeq:NP_001325269.1 | RefSeq:NP_565685.1 | UniProt:O82388 |
| ProteinID:OAP09806.1 | PFscan:PS50005 | PFscan:PS50293 | PANTHER:PTHR26312 | PANTHER:PTHR26312:SF83 | SMART:SM00386 |
| SUPFAM:SSF48452 | InterPro:TPR-contain_dom | InterPro:TPR-like_helical_dom_sf | InterPro:TPR_repeat | UniParc:UPI00000AC666 | SEG:seg |
Description
At2g29670/T27A16.23 [Source:UniProtKB/TrEMBL;Acc:O82388]
Coordinates
chr2:-:12681958..12685145
Molecular Weight (calculated)
60327.3 Da
IEP (calculated)
4.657
GRAVY (calculated)
-0.456
Length
536 amino acids
Sequence
(BLAST)
(BLAST)
001: MGVKVASSST FLQWTTQPII HQSSSPSQTL ASGTITSPSK RRSTVHDGRF LSCRFVTQRL NRSALFGTPS TKLHRPKSCE LWKSSSSSSR PIKTQSFRRV
101: YSANLDPFSD EEFSKKIQEL TLRFNIPHHD DDENSIEPPW NEMVHLSSIE MKANSVDLPL SLRIIKKKRQ WEEGVKQAGE SACCSMNKAF SSMVFMIREL
201: QSFTLHMREI LFYEDLQEIL LRVREEMQQS FVWLFQQVFS ATPTLMVYVM ILLANFTVYS IGNNSSALAA VAPLPPTITE LTTVSETEET NVKFDSSVVK
301: TFFVSSPSGS IASVGGNNNG GGGNVKPVLS GTDGDGSDGS EQFRTIIPEG VSQLSSSNFG SEPSVSGQDE HRLWNSMVEE AERMQYSNID DSLDQETRKR
401: FVSHVEARVE AEEDTGYFKT ELMYQTELSQ EPNNPLLLAN YAQFLYLVSN DHDRAEEYFK RAVGVEPKDA EAFSKYATFL WRARDDLWAA EETFLEAIDA
501: DPTNSYYAAN YANFLWNTGG DDTCFPLDDE SHEDTI
101: YSANLDPFSD EEFSKKIQEL TLRFNIPHHD DDENSIEPPW NEMVHLSSIE MKANSVDLPL SLRIIKKKRQ WEEGVKQAGE SACCSMNKAF SSMVFMIREL
201: QSFTLHMREI LFYEDLQEIL LRVREEMQQS FVWLFQQVFS ATPTLMVYVM ILLANFTVYS IGNNSSALAA VAPLPPTITE LTTVSETEET NVKFDSSVVK
301: TFFVSSPSGS IASVGGNNNG GGGNVKPVLS GTDGDGSDGS EQFRTIIPEG VSQLSSSNFG SEPSVSGQDE HRLWNSMVEE AERMQYSNID DSLDQETRKR
401: FVSHVEARVE AEEDTGYFKT ELMYQTELSQ EPNNPLLLAN YAQFLYLVSN DHDRAEEYFK RAVGVEPKDA EAFSKYATFL WRARDDLWAA EETFLEAIDA
501: DPTNSYYAAN YANFLWNTGG DDTCFPLDDE SHEDTI
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.