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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 6
  • mitochondrion 1
  • cytosol 1
  • nucleus 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:plastid
ChloroP:plastid
iPSORT:mitochondrion
MultiLoc:cytosol
Predotar:plastid
PProwler:plastid
TargetP:plastid
WoLF PSORT:plastid
YLoc:nucleus
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX99068 Canola plastid 71.26 80.13
Bra018168.1-P Field mustard plastid 71.07 79.91
CDX86126 Canola plastid 71.46 75.72
CDY58299 Canola plastid 65.44 69.48
Bra019495.1-P Field mustard plastid 62.14 69.11
CDY38075 Canola plastid 56.5 68.63
VIT_06s0004g06290.t01 Wine grape plastid 48.35 47.07
KRH46437 Soybean plastid 47.38 46.48
AT2G29670.2 Thale cress plastid 47.38 45.52
KRG98335 Soybean plastid 46.8 45.3
Solyc06g076850.2.1 Tomato plastid 47.38 44.28
PGSC0003DMT400078227 Potato plastid 46.99 43.76
AT1G07280.1 Thale cress plastid 46.02 42.93
GSMUA_Achr8P02280_001 Banana plastid 35.53 36.6
TraesCS3B01G400100.1 Wheat plastid 33.98 36.53
TraesCS3D01G361500.1 Wheat plastid 33.98 36.46
Os05t0447700-01 Rice plastid 34.17 36.36
HORVU3Hr1G084970.2 Barley plastid 33.79 36.02
TraesCS3A01G368600.1 Wheat plastid 33.59 35.97
GSMUA_Achr9P03650_001 Banana plastid 35.34 35.9
TraesCS1B01G287500.1 Wheat plastid 33.2 35.7
GSMUA_Achr11P... Banana plastid 34.37 35.47
TraesCS1A01G278600.1 Wheat plastid 32.04 35.11
TraesCS1D01G277900.1 Wheat plastid 32.23 35.02
GSMUA_Achr6P33690_001 Banana plastid 36.12 34.83
Os01t0855200-01 Rice plastid 34.56 34.77
Zm00001d012325_P001 Maize plastid 33.59 33.53
Zm00001d042812_P001 Maize plastid 33.4 32.89
KXG22120 Sorghum plastid 32.23 32.55
HORVU1Hr1G073460.2 Barley plastid 32.23 32.42
EES01775 Sorghum plastid 33.2 32.26
Zm00001d038274_P002 Maize plastid 30.87 31.67
Zm00001d010075_P001 Maize plastid 32.23 31.62
GSMUA_Achr5P28840_001 Banana cytosol 32.23 29.59
AT4G32340.1 Thale cress mitochondrion 9.51 20.59
AT5G20190.1 Thale cress plastid 10.87 19.31
AT4G17940.1 Thale cress mitochondrion 9.13 17.15
AT1G80130.1 Thale cress nucleus 8.93 15.08
AT1G04530.1 Thale cress cytoskeleton, cytosol, nucleus 8.93 14.84
Protein Annotations
Gene3D:1.25.40.10MapMan:35.2EntrezGene:823861ProteinID:AEE78241.1ArrayExpress:AT3G47080EnsemblPlantsGene:AT3G47080
RefSeq:AT3G47080TAIR:AT3G47080RefSeq:AT3G47080-TAIR-GEnsemblPlants:AT3G47080.1TAIR:AT3G47080.1EMBL:AY039956
EMBL:AY079400Unigene:At.22244ProteinID:CAB61954.1ncoils:CoilGO:GO:0003674GO:GO:0005488
GO:GO:0005515InterPro:IPR011990InterPro:IPR013026RefSeq:NP_190292.1PO:PO:0000013PO:PO:0000037
PO:PO:0000084PO:PO:0000230PO:PO:0000293PO:PO:0001016PO:PO:0001017PO:PO:0001054
PO:PO:0001078PO:PO:0001081PO:PO:0001185PO:PO:0004507PO:PO:0007064PO:PO:0007095
PO:PO:0007098PO:PO:0007103PO:PO:0007115PO:PO:0007123PO:PO:0007611PO:PO:0007616
PO:PO:0008019PO:PO:0009005PO:PO:0009006PO:PO:0009009PO:PO:0009010PO:PO:0009025
PO:PO:0009029PO:PO:0009030PO:PO:0009031PO:PO:0009032PO:PO:0009046PO:PO:0009047
PO:PO:0009052PO:PO:0020030PO:PO:0020038PO:PO:0020100PO:PO:0020137PO:PO:0025022
PO:PO:0025195PO:PO:0025281PFscan:PS50293PANTHER:PTHR26312PANTHER:PTHR26312:SF87UniProt:Q9SD65
SUPFAM:SSF48452InterPro:TPR-contain_domInterPro:TPR-like_helical_dom_sfUniParc:UPI00000AB7BBSEG:seg:
Description
Tetratricopeptide repeat (TPR)-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9SD65]
Coordinates
chr3:-:17338102..17340543
Molecular Weight (calculated)
58193.6 Da
IEP (calculated)
6.581
GRAVY (calculated)
-0.483
Length
515 amino acids
Sequence
(BLAST)
001: MEVKVATTTS FHWSGRHTAI PQCPSFSQTL TSSKRRRSRG IAGDVSVGGG SLRLKPSTFL GTQSGKLHRS KSCELWQFSN STTKKIRTDV KKKHNPLRRV
101: CSASSGFFSS DEAFSVKMQE LASQFRNAGD EEEEENKQKS EAVDNDNDSN NHRFGSLKLL QESVPGLASL EAPWAEMVNH SSIERKANSV DLPLSLRIIK
201: RKLQEEALKK ASATTYCSIN RAFSSMVFMI EELHSFALQT RVGVLKQVKK EMHASLLWIF QRVFSQTPTL MVYVMILLAN YTVHSVASNL PIAASPPVVN
301: KGPDQTQQRI DFSSLKESTK LDGSKWLGSI NFDKVSHLPR HRDSVSGEGM REEEVSLWNS MVEEADQMQD SSVDRDMRLR LVSPITARIE LDDYANYTRT
401: ELLYKIGLAQ EPDNHLLLAN YAQFLYLVTQ DHERAENCFK KAIESEDVDA ETYSKYAIFL WKVRNDLWAA EENFLEAISA DPTNSFYAAN YANFLWNTGG
501: EETCFPLEDS TQEMV
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.