Factsheet for TraesCS3B01G400100.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G361500.1	Wheat	plastid	98.54	98.33
TraesCS3A01G368600.1	Wheat	plastid	97.29	96.88
HORVU3Hr1G084970.2	Barley	plastid	95.41	94.62
Os01t0855200-01	Rice	plastid	82.05	76.76
Zm00001d042812_P001	Maize	plastid	75.57	69.22
Zm00001d012325_P001	Maize	plastid	73.7	68.41
EES01775	Sorghum	plastid	74.32	67.17
TraesCS1B01G287500.1	Wheat	plastid	62.21	62.21
CDY02002	Canola	cytosol, mitochondrion, nucleus	16.49	51.97
GSMUA_Achr8P02280_001	Banana	plastid	48.85	46.8
GSMUA_Achr9P03650_001	Banana	plastid	49.48	46.75
GSMUA_Achr6P33690_001	Banana	plastid	49.69	44.57
GSMUA_Achr11P...	Banana	plastid	46.35	44.49
Bra018368.1-P	Field mustard	plastid	41.75	42.83
VIT_06s0004g06290.t01	Wine grape	plastid	46.97	42.53
CDY51354	Canola	plastid	41.96	41.7
Bra039995.1-P	Field mustard	plastid	41.96	41.36
KRG98335	Soybean	plastid	45.72	41.17
CDX97868	Canola	plastid	43.01	41.04
Bra015570.1-P	Field mustard	plastid	43.42	40.47
CDY06247	Canola	plastid	41.75	40.4
Bra031567.1-P	Field mustard	plastid	41.75	40.4
AT2G29670.2	Thale cress	plastid	45.09	40.3
CDY06694	Canola	plastid	43.22	40.27
CDY10264	Canola	plastid	43.42	40.23
KRH46437	Soybean	plastid	43.84	40.0
Solyc06g076850.2.1	Tomato	plastid	45.72	39.75
PGSC0003DMT400078227	Potato	plastid	45.72	39.6
CDY09927	Canola	plastid	40.5	39.19
GSMUA_Achr5P28840_001	Banana	cytosol	45.09	38.5
AT1G07280.1	Thale cress	plastid	42.8	37.14
CDX99068	Canola	plastid	34.45	36.03
Bra018168.1-P	Field mustard	plastid	34.45	36.03
Bra019495.1-P	Field mustard	plastid	34.45	35.64
CDX86126	Canola	plastid	35.7	35.19
CDY58299	Canola	plastid	35.07	34.64
AT3G47080.1	Thale cress	plastid	36.53	33.98
CDY38075	Canola	plastid	30.06	33.96
TraesCS1B01G191700.1	Wheat	plastid	19.21	26.67
TraesCS1B01G209200.1	Wheat	plastid	12.53	25.32
TraesCS7B01G279400.1	Wheat	mitochondrion	13.15	21.5
TraesCS4B01G342900.1	Wheat	mitochondrion	13.57	20.63

Protein Annotations

EnsemblPlants:TraesCS3B01G400100.1	EnsemblPlantsGene:TraesCS3B01G400100	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR011990	InterPro:IPR013026	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR26312	PANTHER:PTHR26312:SF83
PFscan:PS50293	SEG:seg	SUPFAM:SSF48452	MapMan:35.2	:	:

Description

No Description!

Coordinates

chr3B:+:631661480..631663013

Molecular Weight (calculated)

51747.9 Da

IEP (calculated)

5.021

GRAVY (calculated)

-0.246

Length

479 amino acids

Sequence
(BLAST)

001: MGIQVAPPSS SLGAGCMRLS RSPSSSSLAT WSAGIARRRA GHAMVTRALS ASIDSVGSHG GDDEEFLRRI QELAVGLHPG AGGCGWPASV ERSASSVGLP
101: LSLRMLKRKK RQQGQRGRWD ERLLDRAGES GSGRGAVGRA FSSMVLIIRE LQSFALQMRQ ALFYEDMQSV LARVHAEMDA SFVWLFQHIF AGTPALMVSV
201: MLLLANFTVY SMGDNIAMAA NLPPPQPTVA AVAMLDAQHA EQSRPDQRFD SVSLNMFSIG RTASVDGNSG GGGKAPPVAG ATGDDRSDES SYRQSGAVLP
301: QDESQATPVG AAAEDTEDEL VIWKRIADEA TRMQASVRVE ALMDPDILGQ LVAPVEAKLD TEDVADYART EQRYAMAVSE EPSNALLLAN FAQFLYLVQR
401: DHDRAEHYFK RAVRAEQPAD AETLGWYATF LWKARNDLAA AEETFQEAIA AEPSNGHHAA AYAHFLWNTG GEDTCYPLD

Best Arabidopsis Sequence Match ( AT1G07280.2 )
(BLAST)

001: MGVKVATSST FHQWVAHPIV HHSSSLSQTL ASSAVSSPSR RRIIGNDGRS SLSCRSVMQS QRLNPSSPFG TSSTNLRHSK SCELWESTKR PKTQLIRRAF
101: SANVDPFSEE EFAKKMQELT LKFQVSNEEE DNESDTRIDD YTRKMDIVGS HNNFRSDSME PPWPEMVQMS NIERKANSVD LPLSLRIIKR KLQMEEGVLN
201: QVGESACCSV KKAFSSMVFM IRELQSFTLH MRELLLFEDL QGILHRVRKE MQASFVWLFQ QVFSATPTLM VSVMILLANF TVYSIESNSA LAAAVSPPTT
301: LSFSFETTAE ISETQETNQK FDSSMVKTFS VSSPYGKTSF VGGGGGNNIP PPVQSGTDGD GSDQFRKSQF SSSSLGATSA DSDVSVSGQE EIRLWNSILE
401: ETAKMETLDH ETMKGMVSPV EARLEAEESM DYFKTELLYQ TGLSQEPGNV LLLANYAQFL YLIIHDYDRA EKYFKRAAKA EPADAEALNK YATFLWRARN
501: DIWRAEETYL EAISADPTNS VYSANYAHFL WNTGGDETCF PLDAPSQQNN TT

Arabidopsis Description

At1g07280/F22G5_32 [Source:UniProtKB/TrEMBL;Acc:Q8VZC8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.