CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra031567.1-P	Field mustard	plastid	100.0	100.0
CDY09927	Canola	plastid	94.95	94.95
CDY06694	Canola	plastid	76.97	74.12
CDY10264	Canola	plastid	76.97	73.69
AT1G07280.1	Thale cress	plastid	78.99	70.83
CDY02002	Canola	cytosol, mitochondrion, nucleus	21.41	69.74
CDX97868	Canola	plastid	57.78	56.97
CDY51354	Canola	plastid	55.15	56.64
VIT_06s0004g06290.t01	Wine grape	plastid	54.34	50.85
KRH46437	Soybean	plastid	52.32	49.33
KRG98335	Soybean	plastid	52.73	49.06
Solyc06g076850.2.1	Tomato	plastid	52.73	47.37
PGSC0003DMT400078227	Potato	plastid	52.53	47.02
CDX99068	Canola	plastid	42.02	45.41
CDX86126	Canola	plastid	43.23	44.03
GSMUA_Achr8P02280_001	Banana	plastid	43.03	42.6
TraesCS3D01G361500.1	Wheat	plastid	40.61	41.88
GSMUA_Achr9P03650_001	Banana	plastid	42.83	41.81
TraesCS3A01G368600.1	Wheat	plastid	40.61	41.79
TraesCS3B01G400100.1	Wheat	plastid	40.4	41.75
CDY58299	Canola	plastid	40.81	41.65
HORVU3Hr1G084970.2	Barley	plastid	40.4	41.41
Os01t0855200-01	Rice	plastid	42.83	41.41
CDY38075	Canola	plastid	34.75	40.57
GSMUA_Achr6P33690_001	Banana	plastid	43.23	40.07
GSMUA_Achr11P...	Banana	plastid	40.2	39.88
Zm00001d012325_P001	Maize	plastid	41.21	39.53
Os05t0447700-01	Rice	plastid	38.38	39.26
TraesCS1B01G287500.1	Wheat	plastid	37.98	39.25
Zm00001d042812_P001	Maize	plastid	41.41	39.2
EES01775	Sorghum	plastid	41.82	39.06
TraesCS1A01G278600.1	Wheat	plastid	36.97	38.94
TraesCS1D01G277900.1	Wheat	plastid	36.97	38.61
KXG22120	Sorghum	plastid	38.59	37.45
HORVU1Hr1G073460.2	Barley	plastid	37.98	36.72
Zm00001d038274_P002	Maize	plastid	36.97	36.45
Zm00001d010075_P001	Maize	plastid	37.98	35.81
GSMUA_Achr5P28840_001	Banana	cytosol	40.0	35.29
CDX78813	Canola	mitochondrion	11.52	24.89
CDX76550	Canola	plastid	12.73	23.95
CDY08881	Canola	plastid	12.53	23.85
CDY44501	Canola	mitochondrion	11.11	22.63
CDX75237	Canola	plastid	11.31	22.58
CDY45101	Canola	plastid	12.73	22.26
CDX68837	Canola	mitochondrion, plastid	11.11	22.0
CDY60380	Canola	plastid	11.72	21.64
CDX88849	Canola	plastid	11.72	21.56
CDX92483	Canola	plastid	12.12	21.43
CDY35827	Canola	plastid	12.12	20.62
CDX87295	Canola	nucleus	10.3	20.16
CDY59180	Canola	cytosol	7.07	19.77
CDX89816	Canola	nucleus	10.51	17.87
CDY39992	Canola	nucleus	10.91	17.65
CDY18241	Canola	nucleus	10.1	17.24
CDY37568	Canola	nucleus	10.71	16.88
CDY41120	Canola	mitochondrion	10.3	16.61

Protein Annotations

EnsemblPlants:CDY06247	EnsemblPlantsGene:GSBRNA2T00122163001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR011990	InterPro:IPR013026	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR26312	PANTHER:PTHR26312:SF83
PFscan:PS50293	ProteinID:CDY06247	ProteinID:CDY06247.1	SEG:seg	SUPFAM:SSF48452	UniParc:UPI0002543437
MapMan:35.2	:	:	:	:	:

Description

BnaA09g49560D

Coordinates

chrLK031968:+:468063..470902

Molecular Weight (calculated)

55847.9 Da

IEP (calculated)

5.619

GRAVY (calculated)

-0.382

Length

495 amino acids

Sequence
(BLAST)

001: MGMKIATTST LHQCVAHHSS SLSQTLSSST VSSLSKRRSI GNNGRSLSCE LWESSRHTKT HLLRRAFSTS VDPFSEEEFS KKMQELSLKF QVSNEEDNDI
101: FGSHDFSIMD TMKPPWHETV QMSTIERKAN SVELPLSLRI IKRKLKMEEE VIKQVGESSA VKRAFSSMVF MIRELQSFTL HMRELLLFED LQGVLLRVRK
201: EMHASFVWLF QQVFSTTPTL MVSVMILLAN FTVYSIGTNS ALAAVSLSFD TTETNAGLDK GTYSATTQNL LFFNKSHEKF DSSVIKTFSV SSPTDGGSGG
301: NNIRPVQSGT DGDGSDKFRM LSQFSTSDSD VSASGQEEIK QWNLILEESE KMETLDHETM KQMVSPVEAR VEAEESMDYF KTELLYQTGL SQQPHNVLLL
401: ANYAQFLYLI IHDYDRAEKY FKRAAKAEPT DAEALNKYAT FLWKARNDIG RAEETFLEAI SADPTNSFYS ANYAHFLWNT GGDETCFPLD APPQR

Best Arabidopsis Sequence Match ( AT1G07280.2 )
(BLAST)

001: MGVKVATSST FHQWVAHPIV HHSSSLSQTL ASSAVSSPSR RRIIGNDGRS SLSCRSVMQS QRLNPSSPFG TSSTNLRHSK SCELWESTKR PKTQLIRRAF
101: SANVDPFSEE EFAKKMQELT LKFQVSNEEE DNESDTRIDD YTRKMDIVGS HNNFRSDSME PPWPEMVQMS NIERKANSVD LPLSLRIIKR KLQMEEGVLN
201: QVGESACCSV KKAFSSMVFM IRELQSFTLH MRELLLFEDL QGILHRVRKE MQASFVWLFQ QVFSATPTLM VSVMILLANF TVYSIESNSA LAAAVSPPTT
301: LSFSFETTAE ISETQETNQK FDSSMVKTFS VSSPYGKTSF VGGGGGNNIP PPVQSGTDGD GSDQFRKSQF SSSSLGATSA DSDVSVSGQE EIRLWNSILE
401: ETAKMETLDH ETMKGMVSPV EARLEAEESM DYFKTELLYQ TGLSQEPGNV LLLANYAQFL YLIIHDYDRA EKYFKRAAKA EPADAEALNK YATFLWRARN
501: DIWRAEETYL EAISADPTNS VYSANYAHFL WNTGGDETCF PLDAPSQQNN TT

Arabidopsis Description

At1g07280/F22G5_32 [Source:UniProtKB/TrEMBL;Acc:Q8VZC8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.