Factsheet for Zm00001d038274_P002

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG22120	Sorghum	plastid	91.63	90.2
Zm00001d010075_P001	Maize	plastid	83.67	80.0
Os05t0447700-01	Rice	plastid	75.3	78.1
TraesCS1D01G277900.1	Wheat	plastid	67.73	71.73
TraesCS1B01G287500.1	Wheat	plastid	67.73	70.98
TraesCS1A01G278600.1	Wheat	plastid	66.14	70.64
HORVU1Hr1G073460.2	Barley	plastid	67.73	66.41
Zm00001d042812_P001	Maize	plastid	61.16	58.7
Zm00001d012325_P001	Maize	plastid	59.96	58.33
CDY02002	Canola	cytosol, mitochondrion, nucleus	14.14	46.71
GSMUA_Achr8P02280_001	Banana	plastid	45.62	45.8
GSMUA_Achr9P03650_001	Banana	plastid	45.42	44.97
GSMUA_Achr11P...	Banana	plastid	42.63	42.89
GSMUA_Achr6P33690_001	Banana	plastid	45.22	42.51
VIT_06s0004g06290.t01	Wine grape	plastid	42.03	39.89
Bra018368.1-P	Field mustard	plastid	36.65	39.4
KRG98335	Soybean	plastid	41.43	39.1
CDY51354	Canola	plastid	37.25	38.8
Bra015570.1-P	Field mustard	plastid	39.64	38.72
Bra039995.1-P	Field mustard	plastid	37.45	38.68
AT2G29670.2	Thale cress	plastid	41.24	38.62
CDY06694	Canola	plastid	39.44	38.52
CDY10264	Canola	plastid	39.64	38.49
KRH46437	Soybean	plastid	40.24	38.48
CDX97868	Canola	plastid	38.25	38.25
Solyc06g076850.2.1	Tomato	plastid	41.04	37.39
Bra031567.1-P	Field mustard	plastid	36.45	36.97
CDY06247	Canola	plastid	36.45	36.97
PGSC0003DMT400078227	Potato	plastid	40.64	36.89
AT1G07280.1	Thale cress	plastid	40.04	36.41
CDY09927	Canola	plastid	35.46	35.96
GSMUA_Achr5P28840_001	Banana	cytosol	38.84	34.76
Bra018168.1-P	Field mustard	plastid	30.28	33.19
CDX99068	Canola	plastid	30.08	32.97
CDX86126	Canola	plastid	31.08	32.1
CDY38075	Canola	plastid	26.29	31.13
Bra019495.1-P	Field mustard	plastid	28.69	31.1
AT3G47080.1	Thale cress	plastid	31.67	30.87
CDY58299	Canola	plastid	29.68	30.72
Zm00001d032535_P002	Maize	plastid	18.13	25.49
Zm00001d013919_P001	Maize	plastid	17.93	24.79
Zm00001d046530_P001	Maize	plastid	13.35	22.56
Zm00001d030086_P001	Maize	plastid	9.36	18.88
Zm00001d003035_P001	Maize	plastid	10.36	18.7
Zm00001d027613_P002	Maize	plastid	13.15	18.54

Protein Annotations

EnsemblPlants:Zm00001d038274_P002	EnsemblPlants:Zm00001d038274_T002	EnsemblPlantsGene:Zm00001d038274	EntrezGene:100277843	Gene3D:1.25.40.10	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR011990	InterPro:IPR013026	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf
PANTHER:PTHR26312	PANTHER:PTHR26312:SF83	PFAM:PF14559	PFscan:PS50293	ProteinID:AQK86207.1	SEG:seg
SUPFAM:SSF48452	UniParc:UPI000221802E	UniProt:A0A1D6M507	MapMan:35.2	:	:

Description

Tetratricopeptide repeat (TPR)-like superfamily protein

Coordinates

chr6:+:153040261..153042534

Molecular Weight (calculated)

53120.7 Da

IEP (calculated)

5.327

GRAVY (calculated)

-0.173

Length

502 amino acids

Sequence
(BLAST)

001: MGFQVAAVAP PPCARSSSAL SSPSTSSRPL PAFLGGGGGC AGLARSRAPV NWGTGVMVRR PRPARTPARC ALSASLDGMG GGDAEFMKRI EELAAAAGVQ
101: PAGPAGCGWP ASVELSASNV GLPLSLRMLK RKKQQQQAQL HAVARPSRWD DGLLGSAGES VGRAFSSMVL IVRELQSFAL QQMRDALLCD DLQGVLARVQ
201: GEMHDSFVWL FQHIFAGTPA FMVSLMLLLA NFTVQSMGRS VAAAAATIPP TAPAVALVNA QRPEPSRPRF DAASVKTFSV DRMASVGGDI GGGGKTPPVA
301: GATGDGRSDE SLYRLSRVSP QQPSAPPVAE VAQDAADADE QAIWEMMLAE ALKASPRTEE LSDPDVLRSL VAPVEAELET EDHAEHTLTE QRYEQAVAAE
401: PNNPLILANF AQFLYLVQND HDRAEHYFER AVRAEPADSE ALSRYATFLW KARNDLAGAE DTYQEAIAAD PGNAHHAAAY AHFLWNTGAC TGTGAEATRR
501: DA

Best Arabidopsis Sequence Match ( AT2G29670.2 )
(BLAST)

001: MGVKVASSST FLQWTTQPII HQSSSPSQTL ASGTITSPSK RRSTVHDGRF LSCRFVTQRL NRSALFGTPS TKLHRPKSCE LWKSSSSSSR PIKTQSFRRV
101: YSANLDPFSD EEFSKKIQEL TLRFNIPHHD DDENSIEPPW NEMVHLSSIE MKANSVDLPL SLRIIKKKRQ WEEGVKQAGE SACCSMNKAF SSMVFMIREL
201: QSFTLHMREI LFYEDLQEIL LRVREEMQQS FVWLFQQVFS ATPTLMVYVM ILLANFTVYS IGNNSSALAA VAPLPPTITE LTTVSETEET NVKFDSSVVK
301: TFFVSSPSGS IASVGGNNNG GGGNVKPVLS GTDGDGSDGS EQFRTIIPEG VSQLSSSNFG SEPSVSGQDE HRLWNSMVEE AERMQYSNID DSLDQETRKR
401: FVSHVEARVE AEEDTGYFKT ELMYQTELSQ EPNNPLLLAN YAQFLYLVSN DHDRAEEYFK RAVGVEPKDA EAFSKYATFL WRARDDLWAA EETFLEAIDA
501: DPTNSYYAAN YANFLWNTGG DDTCFPLDDE SHEDTI

Arabidopsis Description

At2g29670/T27A16.23 [Source:UniProtKB/TrEMBL;Acc:O82388]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.