Factsheet for TraesCS1D01G277900.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G278600.1	Wheat	plastid	93.88	94.68
TraesCS1B01G287500.1	Wheat	plastid	94.94	93.95
HORVU1Hr1G073460.2	Barley	plastid	89.03	82.42
Os05t0447700-01	Rice	plastid	79.32	77.69
KXG22120	Sorghum	plastid	73.42	68.24
Zm00001d038274_P002	Maize	plastid	71.73	67.73
Zm00001d010075_P001	Maize	plastid	69.41	62.67
TraesCS3D01G361500.1	Wheat	plastid	62.24	61.46
CDY02002	Canola	cytosol, mitochondrion, nucleus	17.09	53.29
GSMUA_Achr9P03650_001	Banana	plastid	48.52	45.36
GSMUA_Achr8P02280_001	Banana	plastid	46.84	44.4
GSMUA_Achr11P...	Banana	plastid	45.57	43.29
GSMUA_Achr6P33690_001	Banana	plastid	48.1	42.7
VIT_06s0004g06290.t01	Wine grape	plastid	45.78	41.02
KRG98335	Soybean	plastid	45.78	40.79
CDY51354	Canola	plastid	41.35	40.66
Bra018368.1-P	Field mustard	plastid	39.87	40.47
CDX97868	Canola	plastid	42.83	40.44
Bra039995.1-P	Field mustard	plastid	41.35	40.33
KRH46437	Soybean	plastid	44.3	40.0
AT2G29670.2	Thale cress	plastid	43.67	38.62
Bra015570.1-P	Field mustard	plastid	41.14	37.94
Solyc06g076850.2.1	Tomato	plastid	43.88	37.75
CDY06694	Canola	plastid	40.93	37.74
CDY10264	Canola	plastid	41.14	37.72
PGSC0003DMT400078227	Potato	plastid	43.67	37.43
CDY06247	Canola	plastid	38.61	36.97
Bra031567.1-P	Field mustard	plastid	38.61	36.97
CDY09927	Canola	plastid	37.34	35.76
AT1G07280.1	Thale cress	plastid	41.56	35.69
GSMUA_Achr5P28840_001	Banana	cytosol	41.14	34.76
Bra018168.1-P	Field mustard	plastid	33.54	34.72
CDX99068	Canola	plastid	33.54	34.72
CDX86126	Canola	plastid	34.6	33.74
Bra019495.1-P	Field mustard	plastid	31.86	32.61
AT3G47080.1	Thale cress	plastid	35.02	32.23
CDY58299	Canola	plastid	32.49	31.75
CDY38075	Canola	plastid	28.27	31.6
TraesCS1D01G166000.1	Wheat	plastid	16.88	23.26
TraesCS7D01G374500.1	Wheat	mitochondrion	13.71	22.97
TraesCS2D01G363900.1	Wheat	mitochondrion, plastid	12.24	21.48

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.2	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0006139
GO:GO:0006396	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	InterPro:HAT	InterPro:IPR011990
InterPro:IPR013026	PFAM:PF14559	PFscan:PS50293	PANTHER:PTHR26312	PANTHER:PTHR26312:SF83	SMART:SM00386
SUPFAM:SSF48452	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	EnsemblPlantsGene:TraesCS1D01G277900	EnsemblPlants:TraesCS1D01G277900.1	SEG:seg

Description

No Description!

Coordinates

chr1D:-:375204287..375205807

Molecular Weight (calculated)

50720.5 Da

IEP (calculated)

5.027

GRAVY (calculated)

-0.244

Length

474 amino acids

Sequence
(BLAST)

001: MGFQVAAVVP SPCAPSTSSR SPFLGGGCGV LARSCAPGGL AARRRGEGRP ARCALSASID GVGGGDMEFL RRIEELAASA GVRTAGCGWP PSLERSASGV
101: GLPLSLRMLK RKKQQRRQQV PQPSRWDERF RLGSAGESVG RAFSSMVLIV RELQSFALQQ MLCDDLQTVL ARAHGEMQDS FVWLFQHIFA GTPALMLSLM
201: LLLANFTVHS MSNSVAAAAV APTPPAATVV DTQHTEPSNP RFDAASVKTF SSGRTASVGG GSGGGGDVRP VAGASGDDRR DESRYSLSRV APQQLTPLAG
301: TGAENIVPDA AAVDEQAIWE RMVAEASSMQ ANARADELTD PDVLGNLVAP VEAEIETEDA GEYARTEQRY ELAVSEEPNN SLILANFAQF LYITRKDHKR
401: AEHYFERAVR AEPADAEALS RYATFLWRAR DDVEAAEETY QQAIAADPGN AHYAAAYAHF LWNTGGEDTC FPLD

Best Arabidopsis Sequence Match ( AT2G29670.2 )
(BLAST)

001: MGVKVASSST FLQWTTQPII HQSSSPSQTL ASGTITSPSK RRSTVHDGRF LSCRFVTQRL NRSALFGTPS TKLHRPKSCE LWKSSSSSSR PIKTQSFRRV
101: YSANLDPFSD EEFSKKIQEL TLRFNIPHHD DDENSIEPPW NEMVHLSSIE MKANSVDLPL SLRIIKKKRQ WEEGVKQAGE SACCSMNKAF SSMVFMIREL
201: QSFTLHMREI LFYEDLQEIL LRVREEMQQS FVWLFQQVFS ATPTLMVYVM ILLANFTVYS IGNNSSALAA VAPLPPTITE LTTVSETEET NVKFDSSVVK
301: TFFVSSPSGS IASVGGNNNG GGGNVKPVLS GTDGDGSDGS EQFRTIIPEG VSQLSSSNFG SEPSVSGQDE HRLWNSMVEE AERMQYSNID DSLDQETRKR
401: FVSHVEARVE AEEDTGYFKT ELMYQTELSQ EPNNPLLLAN YAQFLYLVSN DHDRAEEYFK RAVGVEPKDA EAFSKYATFL WRARDDLWAA EETFLEAIDA
501: DPTNSYYAAN YANFLWNTGG DDTCFPLDDE SHEDTI

Arabidopsis Description

At2g29670/T27A16.23 [Source:UniProtKB/TrEMBL;Acc:O82388]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.