Factsheet for Solyc06g076850.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400078227	Potato	plastid	96.91	96.56
VIT_06s0004g06290.t01	Wine grape	plastid	62.98	65.6
CDY02002	Canola	cytosol, mitochondrion, nucleus	17.06	61.84
KRG98335	Soybean	plastid	58.26	60.34
KRH46437	Soybean	plastid	56.08	58.86
CDX97868	Canola	plastid	51.36	56.37
CDY51354	Canola	plastid	49.18	56.22
Bra039995.1-P	Field mustard	plastid	49.18	55.76
Bra018368.1-P	Field mustard	plastid	47.01	55.46
AT2G29670.2	Thale cress	plastid	53.36	54.85
AT1G07280.1	Thale cress	plastid	54.27	54.17
Bra015570.1-P	Field mustard	plastid	50.27	53.89
CDY06694	Canola	plastid	50.27	53.89
CDY10264	Canola	plastid	49.91	53.19
Bra031567.1-P	Field mustard	plastid	47.37	52.73
CDY06247	Canola	plastid	47.37	52.73
CDY09927	Canola	plastid	46.46	51.72
Bra018168.1-P	Field mustard	plastid	42.29	50.87
CDX99068	Canola	plastid	42.11	50.66
GSMUA_Achr8P02280_001	Banana	plastid	45.73	50.4
CDX86126	Canola	plastid	42.83	48.56
Bra019495.1-P	Field mustard	plastid	40.47	48.16
GSMUA_Achr9P03650_001	Banana	plastid	44.1	47.93
GSMUA_Achr11P...	Banana	plastid	43.19	47.7
CDY58299	Canola	plastid	41.74	47.42
AT3G47080.1	Thale cress	plastid	44.28	47.38
Os01t0855200-01	Rice	plastid	43.38	46.68
CDY38075	Canola	plastid	35.75	46.46
TraesCS3B01G400100.1	Wheat	plastid	39.75	45.72
TraesCS3D01G361500.1	Wheat	plastid	39.75	45.62
Zm00001d012325_P001	Maize	plastid	42.65	45.54
TraesCS3A01G368600.1	Wheat	plastid	39.75	45.53
HORVU3Hr1G084970.2	Barley	plastid	39.75	45.34
Zm00001d042812_P001	Maize	plastid	42.83	45.12
GSMUA_Achr6P33690_001	Banana	plastid	43.56	44.94
EES01775	Sorghum	plastid	42.83	44.53
Os05t0447700-01	Rice	plastid	39.02	44.42
TraesCS1D01G277900.1	Wheat	plastid	37.75	43.88
TraesCS1A01G278600.1	Wheat	plastid	37.39	43.83
TraesCS1B01G287500.1	Wheat	plastid	37.93	43.63
KXG22120	Sorghum	plastid	38.29	41.37
Solyc05g052700.2.1	Tomato	extracellular	33.76	41.24
Zm00001d038274_P002	Maize	plastid	37.39	41.04
HORVU1Hr1G073460.2	Barley	plastid	37.57	40.43
Zm00001d010075_P001	Maize	plastid	37.39	39.24
GSMUA_Achr5P28840_001	Banana	cytosol	39.75	39.04
Solyc06g068130.2.1	Tomato	plastid	10.53	24.17
Solyc07g008210.2.1	Tomato	cytosol, nucleus, plastid	9.98	23.91
Solyc03g116670.2.1	Tomato	nucleus	11.43	20.0
Solyc08g076730.2.1	Tomato	plastid	10.89	19.87
Solyc09g064630.2.1	Tomato	plastid	11.43	17.65
Solyc09g090930.2.1	Tomato	nucleus	9.07	12.56
Solyc03g005710.1.1	Tomato	cytosol	7.62	11.11

Protein Annotations

EnsemblPlants:Solyc06g076850.2.1	EnsemblPlantsGene:Solyc06g076850.2	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR011990	InterPro:IPR013026	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR26312	PANTHER:PTHR26312:SF83
PFAM:PF14559	PFscan:PS50293	SEG:seg	SUPFAM:SSF48452	UniParc:UPI00027672EE	UniProt:K4CA43
MapMan:35.2	:	:	:	:	:

Description

No Description!

Coordinates

chr6:-:47742135..47745217

Molecular Weight (calculated)

62098.5 Da

IEP (calculated)

4.990

GRAVY (calculated)

-0.471

Length

551 amino acids

Sequence
(BLAST)

001: MGVKVATTCL QWAQPFVPHS TSSSSQTFAS AISPPSSSKR HSFSRKGSLI CRYVHRLDKS ALFGTQLLNL YRSKSCEQLK PRTRTIRRAS STSSSLDSFS
101: DEEFSKEIQE LAKKFQLSDV ENPSTISSRS DFVETRDESI SSDNKFLENQ RPFDPLEQPD WPERDEIIPA NIEWKANSVD LPFSLRIIKR KKQWQDGIRE
201: AGESAYCSVK KAFSNMVFII RELQSYTLQM RELLFYEDLQ GILVRVQKEM HASFVWLFQQ VFSHTPTLMV YVMILLANYS VHSMASSAAI AATPPPLTET
301: VSTLDESHFN QKFDSSAIKT FSVSSSSGKV TSIGGGNGGG GSYKPIASGN DGDGRFDGQM RNGISSIESS RVGEEECVSG QETTEEELQI WNSIVDEASK
401: MQASVRDESL DHETMQRFVS PINANIEVSN YAEYIKTELL YLVELKQEPQ NTLLLANYAQ FLFLVAQDYD RAEKYFKKAA EVEPKDAEAL NKYANFLWKV
501: RKDLWAAEET FNQAIAAEPN NNFYAANYAH FLWNTGGEDT CYPLDSSNTD L

Best Arabidopsis Sequence Match ( AT2G29670.2 )
(BLAST)

001: MGVKVASSST FLQWTTQPII HQSSSPSQTL ASGTITSPSK RRSTVHDGRF LSCRFVTQRL NRSALFGTPS TKLHRPKSCE LWKSSSSSSR PIKTQSFRRV
101: YSANLDPFSD EEFSKKIQEL TLRFNIPHHD DDENSIEPPW NEMVHLSSIE MKANSVDLPL SLRIIKKKRQ WEEGVKQAGE SACCSMNKAF SSMVFMIREL
201: QSFTLHMREI LFYEDLQEIL LRVREEMQQS FVWLFQQVFS ATPTLMVYVM ILLANFTVYS IGNNSSALAA VAPLPPTITE LTTVSETEET NVKFDSSVVK
301: TFFVSSPSGS IASVGGNNNG GGGNVKPVLS GTDGDGSDGS EQFRTIIPEG VSQLSSSNFG SEPSVSGQDE HRLWNSMVEE AERMQYSNID DSLDQETRKR
401: FVSHVEARVE AEEDTGYFKT ELMYQTELSQ EPNNPLLLAN YAQFLYLVSN DHDRAEEYFK RAVGVEPKDA EAFSKYATFL WRARDDLWAA EETFLEAIDA
501: DPTNSYYAAN YANFLWNTGG DDTCFPLDDE SHEDTI

Arabidopsis Description

At2g29670/T27A16.23 [Source:UniProtKB/TrEMBL;Acc:O82388]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.