Factsheet for GSMUA_Achr9P03650_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 1
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P02280_001	Banana	plastid	70.61	71.6
GSMUA_Achr6P33690_001	Banana	plastid	73.37	69.66
GSMUA_Achr11P...	Banana	plastid	66.27	67.33
CDY02002	Canola	cytosol, mitochondrion, nucleus	16.37	54.61
GSMUA_Achr5P28840_001	Banana	cytosol	59.37	53.65
Zm00001d012325_P001	Maize	plastid	50.89	50.0
HORVU3Hr1G084970.2	Barley	plastid	47.34	49.69
TraesCS3D01G361500.1	Wheat	plastid	46.94	49.58
TraesCS3B01G400100.1	Wheat	plastid	46.75	49.48
Os05t0447700-01	Rice	plastid	47.14	49.38
Os01t0855200-01	Rice	plastid	49.7	49.22
VIT_06s0004g06290.t01	Wine grape	plastid	51.08	48.96
TraesCS3A01G368600.1	Wheat	plastid	46.15	48.65
TraesCS1D01G277900.1	Wheat	plastid	45.36	48.52
Zm00001d042812_P001	Maize	plastid	49.9	48.37
EES01775	Sorghum	plastid	50.49	48.3
TraesCS1B01G287500.1	Wheat	plastid	45.36	48.02
TraesCS1A01G278600.1	Wheat	plastid	43.98	47.45
KRG98335	Soybean	plastid	49.11	46.8
CDY51354	Canola	plastid	43.59	45.85
KRH46437	Soybean	plastid	47.34	45.71
KXG22120	Sorghum	plastid	45.96	45.69
Bra039995.1-P	Field mustard	plastid	43.79	45.68
Zm00001d038274_P002	Maize	plastid	44.97	45.42
Bra018368.1-P	Field mustard	plastid	41.22	44.75
CDX97868	Canola	plastid	44.18	44.62
AT2G29670.2	Thale cress	plastid	47.14	44.59
HORVU1Hr1G073460.2	Barley	plastid	44.58	44.14
Solyc06g076850.2.1	Tomato	plastid	47.93	44.1
Zm00001d010075_P001	Maize	plastid	45.56	44.0
PGSC0003DMT400078227	Potato	plastid	47.73	43.76
Bra015570.1-P	Field mustard	plastid	44.18	43.58
CDY06694	Canola	plastid	43.98	43.39
CDY10264	Canola	plastid	43.79	42.94
Bra031567.1-P	Field mustard	plastid	41.81	42.83
CDY06247	Canola	plastid	41.81	42.83
AT1G07280.1	Thale cress	plastid	45.36	41.67
CDY09927	Canola	plastid	40.63	41.62
CDX99068	Canola	plastid	34.71	38.43
Bra018168.1-P	Field mustard	plastid	34.71	38.43
CDX86126	Canola	plastid	35.31	36.83
Bra019495.1-P	Field mustard	plastid	32.94	36.07
CDY38075	Canola	plastid	29.78	35.61
CDY58299	Canola	plastid	33.92	35.46
AT3G47080.1	Thale cress	plastid	35.9	35.34
GSMUA_Achr2P15930_001	Banana	cytosol	7.5	31.67
GSMUA_Achr4P27320_001	Banana	plastid	13.02	24.91
GSMUA_Achr5P03500_001	Banana	plastid	12.23	24.9
GSMUA_Achr1P01000_001	Banana	plastid	11.83	22.14
GSMUA_Achr5P15660_001	Banana	plastid	10.85	18.97

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.2	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	EnsemblPlantsGene:GSMUA_Achr9G03650_001	EnsemblPlants:GSMUA_Achr9P03650_001	EnsemblPlants:GSMUA_Achr9T03650_001
InterPro:IPR011990	InterPro:IPR013026	UniProt:M0TX74	PFscan:PS50293	PANTHER:PTHR26312	PANTHER:PTHR26312:SF83
SUPFAM:SSF48452	TMHMM:TMhelix	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	UniParc:UPI000295126B	SEG:seg

Description

expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr9G03650_001]

Coordinates

chr9:-:2509661..2511993

Molecular Weight (calculated)

55195.6 Da

IEP (calculated)

5.155

GRAVY (calculated)

-0.348

Length

507 amino acids

Sequence
(BLAST)

001: MGVQVAATCT RWSQLSPTNS LNSSQVAAAV SPLGSSKRMG AAAGVCDCVL ASAFLGAGSG KLLRARSSET HRGRGRRSRQ QALRRPFSAS LEHFAAQGGD
101: EEEEEEFLQR LEGLALELQQ ERADGSEDST PDWPDQIVPP SVERSANSVE LPLSLRIIKR KKRREDGWFR ETGESACCSV KRAFSSMVFM IRELQSYTLQ
201: MREVLCREDL QGILARVKRE MNSSFVWLFQ QIFSCTPTLM VSIMLLLANF TVYSMGHLDA SAMSAPDPPT QQSLVETVVV EERRQSHHNQ SSIVKTFSST
301: GRTASIGGSG AGGGGKARPV AGATGDGQPD GGSSAYSTIL PDGISTASGA EVASIQSSTR DEALMDPETV RRLVSPVAVE LEPDDYSGYL RTEIMYQHAL
401: SQDPENALLL ANFAQFLHVV HHDHDRAEYY FKRAAGLKPA DAEALGRYAS FLWLARKDLE AAEETYLEAI AADPGNTVHA ANYAHFLWST GGEDTCYPLD
501: DGNNDAW

Best Arabidopsis Sequence Match ( AT2G29670.2 )
(BLAST)

001: MGVKVASSST FLQWTTQPII HQSSSPSQTL ASGTITSPSK RRSTVHDGRF LSCRFVTQRL NRSALFGTPS TKLHRPKSCE LWKSSSSSSR PIKTQSFRRV
101: YSANLDPFSD EEFSKKIQEL TLRFNIPHHD DDENSIEPPW NEMVHLSSIE MKANSVDLPL SLRIIKKKRQ WEEGVKQAGE SACCSMNKAF SSMVFMIREL
201: QSFTLHMREI LFYEDLQEIL LRVREEMQQS FVWLFQQVFS ATPTLMVYVM ILLANFTVYS IGNNSSALAA VAPLPPTITE LTTVSETEET NVKFDSSVVK
301: TFFVSSPSGS IASVGGNNNG GGGNVKPVLS GTDGDGSDGS EQFRTIIPEG VSQLSSSNFG SEPSVSGQDE HRLWNSMVEE AERMQYSNID DSLDQETRKR
401: FVSHVEARVE AEEDTGYFKT ELMYQTELSQ EPNNPLLLAN YAQFLYLVSN DHDRAEEYFK RAVGVEPKDA EAFSKYATFL WRARDDLWAA EETFLEAIDA
501: DPTNSYYAAN YANFLWNTGG DDTCFPLDDE SHEDTI

Arabidopsis Description

At2g29670/T27A16.23 [Source:UniProtKB/TrEMBL;Acc:O82388]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.