Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 6
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_07s0005g04340.t01 | Wine grape | cytosol, mitochondrion, nucleus | 28.41 | 63.64 |
| GSMUA_Achr5P15660_001 | Banana | plastid | 64.58 | 60.34 |
| KRG95736 | Soybean | cytosol, nucleus, plastid | 36.9 | 46.95 |
| HORVU5Hr1G031990.1 | Barley | nucleus | 20.3 | 46.61 |
| GSMUA_Achr2P15930_001 | Banana | cytosol | 19.56 | 44.17 |
| Os04t0510600-01 | Rice | plastid | 42.07 | 41.16 |
| TraesCS2D01G363900.1 | Wheat | mitochondrion, plastid | 40.96 | 41.11 |
| TraesCS2A01G367000.1 | Wheat | plastid | 40.59 | 40.74 |
| TraesCS5A01G512000.1 | Wheat | mitochondrion, plastid | 46.49 | 40.13 |
| Zm00001d003035_P001 | Maize | plastid | 40.59 | 39.57 |
| TraesCS4B01G342900.1 | Wheat | mitochondrion | 45.39 | 39.05 |
| EER92881 | Sorghum | plastid | 48.34 | 38.64 |
| Os03t0140700-01 | Rice | plastid | 46.86 | 37.46 |
| Zm00001d027613_P002 | Maize | plastid | 48.34 | 36.8 |
| KRH67454 | Soybean | nucleus | 48.34 | 36.69 |
| HORVU2Hr1G088520.1 | Barley | cytosol, nucleus, plastid | 40.22 | 36.58 |
| Solyc09g064630.2.1 | Tomato | plastid | 47.23 | 35.85 |
| PGSC0003DMT400022129 | Potato | plastid | 47.23 | 35.56 |
| HORVU4Hr1G084230.1 | Barley | mitochondrion, plastid | 44.65 | 35.48 |
| EES12482 | Sorghum | nucleus | 43.17 | 35.45 |
| GSMUA_Achr5P03500_001 | Banana | plastid | 30.26 | 32.93 |
| GSMUA_Achr4P27320_001 | Banana | plastid | 29.15 | 29.81 |
| CDX89816 | Canola | nucleus | 28.41 | 26.46 |
| CDY18241 | Canola | nucleus | 28.04 | 26.21 |
| CDY59180 | Canola | cytosol | 16.97 | 25.99 |
| AT1G04530.1 | Thale cress | cytoskeleton, cytosol, nucleus | 28.04 | 24.52 |
| Bra015324.1-P | Field mustard | nucleus | 28.78 | 24.45 |
| VIT_05s0049g01950.t01 | Wine grape | plastid | 42.8 | 21.85 |
| KRG92250 | Soybean | cytosol | 30.26 | 21.19 |
| KRH34549 | Soybean | nucleus | 29.89 | 20.72 |
| PGSC0003DMT400003940 | Potato | nucleus | 26.57 | 17.91 |
| Solyc09g090930.2.1 | Tomato | nucleus | 25.83 | 17.59 |
| Solyc03g005710.1.1 | Tomato | cytosol | 23.62 | 16.93 |
| PGSC0003DMT400035002 | Potato | plastid | 38.75 | 14.83 |
| GSMUA_Achr11P... | Banana | plastid | 23.62 | 12.83 |
| GSMUA_Achr8P02280_001 | Banana | plastid | 22.51 | 12.2 |
| GSMUA_Achr9P03650_001 | Banana | plastid | 22.14 | 11.83 |
| GSMUA_Achr6P33690_001 | Banana | plastid | 22.14 | 11.24 |
| GSMUA_Achr5P28840_001 | Banana | cytosol | 19.56 | 9.45 |
Protein Annotations
| Gene3D:1.25.40.10 | MapMan:35.2 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006139 |
| GO:GO:0006396 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | EnsemblPlantsGene:GSMUA_Achr1G01000_001 | EnsemblPlants:GSMUA_Achr1P01000_001 |
| EnsemblPlants:GSMUA_Achr1T01000_001 | InterPro:HAT | InterPro:IPR011990 | InterPro:IPR013026 | UniProt:M0RW08 | PFAM:PF13431 |
| PFscan:PS50293 | PANTHER:PTHR26312 | PANTHER:PTHR26312:SF89 | SMART:SM00386 | SUPFAM:SSF48452 | InterPro:TPR-contain_dom |
| InterPro:TPR-like_helical_dom_sf | UniParc:UPI000296D074 | SEG:seg | : | : | : |
Description
expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr1G01000_001]
Coordinates
chr1:+:734789..736262
Molecular Weight (calculated)
29295.7 Da
IEP (calculated)
5.099
GRAVY (calculated)
-0.537
Length
271 amino acids
Sequence
(BLAST)
(BLAST)
001: MMLRSSSTPI LGSLLSSSSS LHFSESPNNF HPHNSPNPNL HTLSCHFSPA SDGLHDQSPS LGIRRSRSDG NLHSFLSDQS DDPNHHNHLL PPSLNPAPPP
101: LFLARGLGID RVGSGLLTAG CGDGGIGGGR SGKWDVLTGN GGEQSDVETY YKKMVEENPS NALFLRNYAQ YLYQAKGDLK RAEEYYSRAI LVDPGDGEIL
201: SQYAKLVWEL HHDEERACSY FQQAVQAAPQ DSHVLAAYAG FLWETEEEDG GGSQDFMVES ARSGGLAPAT A
101: LFLARGLGID RVGSGLLTAG CGDGGIGGGR SGKWDVLTGN GGEQSDVETY YKKMVEENPS NALFLRNYAQ YLYQAKGDLK RAEEYYSRAI LVDPGDGEIL
201: SQYAKLVWEL HHDEERACSY FQQAVQAAPQ DSHVLAAYAG FLWETEEEDG GGSQDFMVES ARSGGLAPAT A
001: MLLRSASTPL LNSLVHVSSP RDSPIETVES VHQIQRHRSI TLSASSSSCC YSPMSVHSSD DSSRRMKRTA SDSDLRHLTS TKPPVSKFLS GGALMEDVDE
101: GIGFGLIRTS SYDGISWALD EDTEVAGGGG GGMFHGGGKG RSGGRSDGGD GGDDNTDVHY RKMIEANPGN GIFLSNYAKF LKEVRKDYLK AEEYCGRAIL
201: VSPNDGNVLA MYAELVWKIH KDSSRAENYF NQAVAAAPED CYVQASYARF LWDAEEEEEE EKEERHEEEL EHQTSRMNFF TGPSPITAMS
101: GIGFGLIRTS SYDGISWALD EDTEVAGGGG GGMFHGGGKG RSGGRSDGGD GGDDNTDVHY RKMIEANPGN GIFLSNYAKF LKEVRKDYLK AEEYCGRAIL
201: VSPNDGNVLA MYAELVWKIH KDSSRAENYF NQAVAAAPED CYVQASYARF LWDAEEEEEE EKEERHEEEL EHQTSRMNFF TGPSPITAMS
Arabidopsis Description
Tetratricopeptide repeat (TPR)-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4K464]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.