Factsheet for PGSC0003DMT400022129

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 1
cytosol 1
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g064630.2.1	Tomato	plastid	92.5	93.28
VIT_07s0005g04340.t01	Wine grape	cytosol, mitochondrion, nucleus	20.56	61.16
KRG95736	Soybean	cytosol, nucleus, plastid	29.72	50.23
GSMUA_Achr1P01000_001	Banana	plastid	35.56	47.23
KRH67454	Soybean	nucleus	44.17	44.54
GSMUA_Achr5P15660_001	Banana	plastid	35.56	44.14
TraesCS5A01G512000.1	Wheat	mitochondrion, plastid	36.11	41.4
TraesCS2A01G367000.1	Wheat	plastid	30.0	40.0
TraesCS4B01G342900.1	Wheat	mitochondrion	35.0	40.0
HORVU5Hr1G031990.1	Barley	nucleus	13.06	39.83
TraesCS2D01G363900.1	Wheat	mitochondrion, plastid	29.72	39.63
Os04t0510600-01	Rice	plastid	30.0	38.99
Os03t0140700-01	Rice	plastid	35.28	37.46
EER92881	Sorghum	plastid	35.0	37.17
Zm00001d027613_P002	Maize	plastid	36.67	37.08
HORVU4Hr1G084230.1	Barley	mitochondrion, plastid	34.72	36.66
HORVU2Hr1G088520.1	Barley	cytosol, nucleus, plastid	29.72	35.91
Zm00001d003035_P001	Maize	plastid	26.94	34.89
EES12482	Sorghum	nucleus	28.89	31.52
PGSC0003DMT400079441	Potato	plastid	20.0	31.03
PGSC0003DMT400073455	Potato	plastid	19.72	29.71
PGSC0003DMT400045174	Potato	plastid	23.33	27.81
PGSC0003DMT400001660	Potato	mitochondrion, nucleus, plastid	23.89	26.88
CDY18241	Canola	nucleus	20.83	25.86
CDX89816	Canola	nucleus	20.28	25.09
CDY59180	Canola	cytosol	11.94	24.29
AT1G04530.1	Thale cress	cytoskeleton, cytosol, nucleus	20.56	23.87
Bra015324.1-P	Field mustard	nucleus	20.28	22.88
PGSC0003DMT400003940	Potato	nucleus	21.94	19.65
PGSC0003DMT400035002	Potato	plastid	30.0	15.25
PGSC0003DMT400069757	Potato	plastid	14.72	11.86
PGSC0003DMT400078227	Potato	plastid	17.78	11.57

Protein Annotations

EnsemblPlants:PGSC0003DMT400022129	EnsemblPlantsGene:PGSC0003DMG400008584	EntrezGene:102584432	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR011990	InterPro:IPR013026	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	ncoils:Coil
PANTHER:PTHR26312	PANTHER:PTHR26312:SF89	PFscan:PS50293	PGSC:PGSC0003DMG400008584	RefSeq:XP_006355883.1	SEG:seg
SUPFAM:SSF48452	UniParc:UPI0002949743	UniProt:M1AG86	MapMan:35.2	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400008584]

Coordinates

chr9:+:46346331..46348439

Molecular Weight (calculated)

39822.6 Da

IEP (calculated)

4.968

GRAVY (calculated)

-0.690

Length

360 amino acids

Sequence
(BLAST)

001: MLLRSSSTPL LGSLHSESPN SHHHHHQSDL TPNHTPNSIH HSYSKLSCSH GGYQNFNRSL YPSNSPISPS FSEISNGNKF PSHGFRRAQS EGNLEGLVKV
101: STDEVVDEFT LSKPTKTLSC KPPKSFLETI PSFSIHNSRE LHSDDDDSDE GDDFDCISGQ YSLGMNAVKG EMSYVSRNSK KEIVEGREEM FLARGLGVAD
201: IGCFDDGGCG IGGGGGGVYR PVAFDKDGGD SQGLHIEEHY KNMIEENPGN SLFLRNYANF LYKTKKDLKG AEEYYSRAIL ADPSDGEVLS QYAKLIWELH
301: RDTDRATSYF ERAVQAASTD SHIHAAYANF LWEIEDEEDE NDETQTQPMV HTVATASITV

Best Arabidopsis Sequence Match ( AT5G20190.1 )
(BLAST)

001: MLLRSASTPL LNSLVHVSSP RDSPIETVES VHQIQRHRSI TLSASSSSCC YSPMSVHSSD DSSRRMKRTA SDSDLRHLTS TKPPVSKFLS GGALMEDVDE
101: GIGFGLIRTS SYDGISWALD EDTEVAGGGG GGMFHGGGKG RSGGRSDGGD GGDDNTDVHY RKMIEANPGN GIFLSNYAKF LKEVRKDYLK AEEYCGRAIL
201: VSPNDGNVLA MYAELVWKIH KDSSRAENYF NQAVAAAPED CYVQASYARF LWDAEEEEEE EKEERHEEEL EHQTSRMNFF TGPSPITAMS

Arabidopsis Description

Tetratricopeptide repeat (TPR)-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4K464]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.