Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 7
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES12482 | Sorghum | nucleus | 85.97 | 72.42 |
| TraesCS2D01G363900.1 | Wheat | mitochondrion, plastid | 62.23 | 64.07 |
| TraesCS2A01G367000.1 | Wheat | plastid | 61.15 | 62.96 |
| Os04t0510600-01 | Rice | plastid | 62.59 | 62.82 |
| HORVU2Hr1G088520.1 | Barley | cytosol, nucleus, plastid | 62.23 | 58.05 |
| VIT_07s0005g04340.t01 | Wine grape | cytosol, mitochondrion, nucleus | 24.82 | 57.02 |
| GSMUA_Achr1P01000_001 | Banana | plastid | 39.57 | 40.59 |
| GSMUA_Achr5P15660_001 | Banana | plastid | 38.13 | 36.55 |
| KRG95736 | Soybean | cytosol, nucleus, plastid | 27.34 | 35.68 |
| Zm00001d027613_P002 | Maize | plastid | 36.33 | 28.37 |
| Solyc09g064630.2.1 | Tomato | plastid | 34.89 | 27.17 |
| PGSC0003DMT400022129 | Potato | plastid | 34.89 | 26.94 |
| KRH67454 | Soybean | nucleus | 34.53 | 26.89 |
| Zm00001d030086_P001 | Maize | plastid | 22.66 | 25.3 |
| CDX89816 | Canola | nucleus | 25.9 | 24.74 |
| CDY18241 | Canola | nucleus | 25.54 | 24.48 |
| Zm00001d046530_P001 | Maize | plastid | 25.54 | 23.91 |
| AT1G04530.1 | Thale cress | cytoskeleton, cytosol, nucleus | 25.9 | 23.23 |
| CDY59180 | Canola | cytosol | 14.75 | 23.16 |
| Bra015324.1-P | Field mustard | nucleus | 25.9 | 22.57 |
| KRG92250 | Soybean | cytosol | 30.58 | 21.96 |
| KRH34549 | Soybean | nucleus | 30.22 | 21.48 |
| VIT_05s0049g01950.t01 | Wine grape | plastid | 37.77 | 19.77 |
| PGSC0003DMT400003940 | Potato | nucleus | 26.98 | 18.66 |
| Solyc09g090930.2.1 | Tomato | nucleus | 26.62 | 18.59 |
| Solyc03g005710.1.1 | Tomato | cytosol | 23.38 | 17.2 |
| PGSC0003DMT400035002 | Potato | plastid | 37.77 | 14.83 |
| Zm00001d032535_P002 | Maize | plastid | 18.35 | 14.29 |
| Zm00001d013919_P001 | Maize | plastid | 17.63 | 13.5 |
| Zm00001d042812_P001 | Maize | plastid | 19.78 | 10.52 |
| Zm00001d010075_P001 | Maize | plastid | 19.78 | 10.48 |
| Zm00001d038274_P002 | Maize | plastid | 18.7 | 10.36 |
| Zm00001d012325_P001 | Maize | plastid | 19.06 | 10.27 |
Protein Annotations
| EMBL:BT065248 | EnsemblPlants:Zm00001d003035_P001 | EnsemblPlants:Zm00001d003035_T001 | EnsemblPlantsGene:Zm00001d003035 | EntrezGene:100382755 | Gene3D:1.25.40.10 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR011990 | InterPro:TPR-like_helical_dom_sf | PANTHER:PTHR26312 |
| PANTHER:PTHR26312:SF78 | ProteinID:ONM15932.1 | SEG:seg | SUPFAM:SSF48452 | UniParc:UPI000194B070 | UniProt:C0PAC9 |
| MapMan:35.2 | : | : | : | : | : |
Description
Tetratricopeptide repeat (TPR)-like superfamily protein
Coordinates
chr2:+:30053282..30054643
Molecular Weight (calculated)
29731.5 Da
IEP (calculated)
4.610
GRAVY (calculated)
-0.369
Length
278 amino acids
Sequence
(BLAST)
(BLAST)
001: MLLRSSSTPF PLPFLSSSLH LRRAFSDAHL PSLHPPSSTP NDAGRTSNPG RGGLHTELSF SVYNTFGKGE AVLAPLASPP RSQGQEGGRQ PPPTVVVQPE
101: HPEVPLFLAR GLGIDRIASG FFTAGADLKG CGASMEEQQD EAVAALDAQY KTMVDEQPGN ALFLRNYAQF LHEAKGDTAR AEEYYSRAML ADPSDGEIMS
201: QYARLVWEVH HDPERCLGYF QQSVQAAPLD SHVLAAYASF LWEQDDDDCG DQGTAGGAAA QERAAGTGQA MELASAAV
101: HPEVPLFLAR GLGIDRIASG FFTAGADLKG CGASMEEQQD EAVAALDAQY KTMVDEQPGN ALFLRNYAQF LHEAKGDTAR AEEYYSRAML ADPSDGEIMS
201: QYARLVWEVH HDPERCLGYF QQSVQAAPLD SHVLAAYASF LWEQDDDDCG DQGTAGGAAA QERAAGTGQA MELASAAV
001: MLLRSASTPL LNSLVHVSSP RDSPIETVES VHQIQRHRSI TLSASSSSCC YSPMSVHSSD DSSRRMKRTA SDSDLRHLTS TKPPVSKFLS GGALMEDVDE
101: GIGFGLIRTS SYDGISWALD EDTEVAGGGG GGMFHGGGKG RSGGRSDGGD GGDDNTDVHY RKMIEANPGN GIFLSNYAKF LKEVRKDYLK AEEYCGRAIL
201: VSPNDGNVLA MYAELVWKIH KDSSRAENYF NQAVAAAPED CYVQASYARF LWDAEEEEEE EKEERHEEEL EHQTSRMNFF TGPSPITAMS
101: GIGFGLIRTS SYDGISWALD EDTEVAGGGG GGMFHGGGKG RSGGRSDGGD GGDDNTDVHY RKMIEANPGN GIFLSNYAKF LKEVRKDYLK AEEYCGRAIL
201: VSPNDGNVLA MYAELVWKIH KDSSRAENYF NQAVAAAPED CYVQASYARF LWDAEEEEEE EKEERHEEEL EHQTSRMNFF TGPSPITAMS
Arabidopsis Description
Tetratricopeptide repeat (TPR)-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4K464]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.