CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d003035_P001	Maize	plastid	72.42	85.97
Os04t0510600-01	Rice	plastid	57.88	68.95
TraesCS2A01G367000.1	Wheat	plastid	55.45	67.78
TraesCS2D01G363900.1	Wheat	mitochondrion, plastid	55.45	67.78
HORVU2Hr1G088520.1	Barley	cytosol, nucleus, plastid	56.67	62.75
VIT_07s0005g04340.t01	Wine grape	cytosol, mitochondrion, nucleus	21.82	59.5
GSMUA_Achr1P01000_001	Banana	plastid	35.45	43.17
KRG95736	Soybean	cytosol, nucleus, plastid	24.24	37.56
GSMUA_Achr5P15660_001	Banana	plastid	32.73	37.24
EER92881	Sorghum	plastid	34.24	33.33
KRH67454	Soybean	nucleus	31.52	29.13
Solyc09g064630.2.1	Tomato	plastid	31.52	29.13
PGSC0003DMT400022129	Potato	plastid	31.52	28.89
EER91874	Sorghum	plastid	20.91	26.74
CDX89816	Canola	nucleus	22.73	25.77
CDY18241	Canola	nucleus	22.42	25.52
EER88623	Sorghum	mitochondrion	23.64	24.38
KRG92250	Soybean	cytosol	28.48	24.29
AT1G04530.1	Thale cress	cytoskeleton, cytosol, nucleus	22.73	24.19
KRH34549	Soybean	nucleus	28.48	24.04
CDY59180	Canola	cytosol	12.73	23.73
Bra015324.1-P	Field mustard	nucleus	22.73	23.51
VIT_05s0049g01950.t01	Wine grape	plastid	34.85	21.66
Solyc09g090930.2.1	Tomato	nucleus	24.55	20.35
PGSC0003DMT400003940	Potato	nucleus	24.24	19.9
Solyc03g005710.1.1	Tomato	cytosol	19.7	17.2
PGSC0003DMT400035002	Potato	plastid	32.42	15.11
EER93981	Sorghum	plastid	15.45	13.78
KXG22120	Sorghum	plastid	16.97	10.98
EES01775	Sorghum	plastid	17.58	10.94

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.2	EntrezGene:8075923	UniProt:C5YBZ3	EnsemblPlants:EES12482	ProteinID:EES12482
ProteinID:EES12482.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR011990	InterPro:IPR013026
PFscan:PS50293	PFscan:PS51257	PANTHER:PTHR26312	PANTHER:PTHR26312:SF78	EnsemblPlantsGene:SORBI_3006G143400	SUPFAM:SSF48452
unigene:Sbi.20661	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0001A8771B	RefSeq:XP_002448154.1	SEG:seg

Description

hypothetical protein

Coordinates

chr6:-:50573267..50575137

Molecular Weight (calculated)

35812.1 Da

IEP (calculated)

4.490

GRAVY (calculated)

-0.563

Length

330 amino acids

Sequence
(BLAST)

001: MIYKLRHERS DHEEEASPPF PLSLSCESRE AETALDRRML LRSSSTPFLH HPFLSSSPSS RSRSSLHLRR AFSDGHLPSL HPSSTPNDAG GGLHTELSFS
101: IYNTFGKDQA IAAPLASSSS SQGQVAQQEL EEEGGQQPPT TVVQPDHPEV PLFLARGLGI DRIASGFFTA GGADKTAGGG ANMERVEEQD EVVAALDAQY
201: KTMVDEQPGN ALFLRNYAQF LHEVKGDTRR AEEYYSRAML ADPSDGEIMS QYAKLVWEVH HDPERCIGYF EKSVQAAPQD SHVLAAYASF LWEQDDDDDD
301: DCGDQGTGGA AAPERAAGTG QAMELASAAV

Best Arabidopsis Sequence Match ( AT5G20190.1 )
(BLAST)

001: MLLRSASTPL LNSLVHVSSP RDSPIETVES VHQIQRHRSI TLSASSSSCC YSPMSVHSSD DSSRRMKRTA SDSDLRHLTS TKPPVSKFLS GGALMEDVDE
101: GIGFGLIRTS SYDGISWALD EDTEVAGGGG GGMFHGGGKG RSGGRSDGGD GGDDNTDVHY RKMIEANPGN GIFLSNYAKF LKEVRKDYLK AEEYCGRAIL
201: VSPNDGNVLA MYAELVWKIH KDSSRAENYF NQAVAAAPED CYVQASYARF LWDAEEEEEE EKEERHEEEL EHQTSRMNFF TGPSPITAMS

Arabidopsis Description

Tetratricopeptide repeat (TPR)-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4K464]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.