Factsheet for HORVU2Hr1G088520.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

cytosol 1
plastid 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
MultiLoc:	cytosol
TargetP:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G363900.1	Wheat	mitochondrion, plastid	81.54	90.0
TraesCS2A01G367000.1	Wheat	plastid	81.54	90.0
Os04t0510600-01	Rice	plastid	62.42	67.15
Zm00001d003035_P001	Maize	plastid	58.05	62.23
EES12482	Sorghum	nucleus	62.75	56.67
VIT_07s0005g04340.t01	Wine grape	cytosol, mitochondrion, nucleus	22.15	54.55
GSMUA_Achr1P01000_001	Banana	plastid	36.58	40.22
HORVU5Hr1G031990.1	Barley	nucleus	15.44	38.98
KRG95736	Soybean	cytosol, nucleus, plastid	25.5	35.68
GSMUA_Achr5P15660_001	Banana	plastid	34.56	35.52
HORVU4Hr1G084230.1	Barley	mitochondrion, plastid	36.58	31.96
PGSC0003DMT400022129	Potato	plastid	35.91	29.72
Solyc09g064630.2.1	Tomato	plastid	35.57	29.69
KRH67454	Soybean	nucleus	32.89	27.45
HORVU7Hr1G090280.1	Barley	mitochondrion	25.84	26.74
CDX89816	Canola	nucleus	24.16	24.74
CDY18241	Canola	nucleus	23.49	24.14
AT1G04530.1	Thale cress	cytoskeleton, cytosol, nucleus	23.83	22.9
Bra015324.1-P	Field mustard	nucleus	24.16	22.57
CDY59180	Canola	cytosol	13.09	22.03
KRG92250	Soybean	cytosol	28.19	21.71
KRH34549	Soybean	nucleus	28.19	21.48
VIT_05s0049g01950.t01	Wine grape	plastid	36.91	20.72
Solyc09g090930.2.1	Tomato	nucleus	26.17	19.6
PGSC0003DMT400003940	Potato	nucleus	25.84	19.15
Solyc03g005710.1.1	Tomato	cytosol	22.82	17.99
HORVU1Hr1G050780.2	Barley	plastid	20.13	15.75
PGSC0003DMT400035002	Potato	plastid	34.56	14.55
HORVU3Hr1G084970.2	Barley	plastid	20.81	12.84
HORVU1Hr1G073460.2	Barley	plastid	20.13	11.72
HORVU1Hr1G045530.3	Barley	cytosol	9.4	9.89
HORVU1Hr1G073400.1	Barley	endoplasmic reticulum	3.36	3.12

Protein Annotations

EnsemblPlants:HORVU2Hr1G088520.1	EnsemblPlantsGene:HORVU2Hr1G088520	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR011990	InterPro:IPR013026	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR26312	PANTHER:PTHR26312:SF78
PFscan:PS50293	SEG:seg	SUPFAM:SSF48452	UniParc:UPI000B47E3C4	UniProt:A0A287IUE7	MapMan:35.2

Description

No Description!

Coordinates

chrchr2H:-:633663346..633665197

Molecular Weight (calculated)

32813.0 Da

IEP (calculated)

4.738

GRAVY (calculated)

-0.570

Length

298 amino acids

Sequence
(BLAST)

001: EAEIWTWERQ ATVPLTRRRP EPERMLLRSS STPFLRAFLS SPSPPSSLHL RRAFSDGHLP SLNPSSNSSG DNKDDDSKTT GLHTELSFSI YNTFSKAKLE
101: PHQEQEMEED QQAAAAAQPE LPELPLFLAR GMGIDRLASG LFTAGMGSQA ALARMASGVD QTAVLALDAQ YKEMVDEQPG NALFLRNYAQ FLHEVKCDAR
201: RAEEYYSRAM LADPTDGEIM SQYAKLVWAV HRDHERSLTY FHKSVQAAPR DSSHVLAAYA SFLWEQDEEE DDDGGVGAGE QGAPGGAAQP RQLASSAV

Best Arabidopsis Sequence Match ( AT4G32340.1 )
(BLAST)

001: MIMRSASSLD LNLRAAQKPS VPRVVTTART VSAATPRVAK PITRASSDGN LYKIQSPESI TKTISVYHEE TASLRVLEGS RLPQGGSNGG FGGRGGDGAG
101: GGGGGGGGSV DGYYEEMIQR YPGDTLLLSN YARFLKEVKG DGRKAEEYCE RAMLSESGRD GELLSMYGDL IWKNHGDGVR AQSYYDQAVQ SSPDDCNVLA
201: SYARFLWDAE EEVEEEESKH HEDGFSDSTY NPSVSVVS

Arabidopsis Description

Tetratricopeptide repeat (TPR)-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:O49358]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.