Factsheet for Solyc03g005710.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400035002	Potato	plastid	88.36	47.18
Solyc09g090930.2.1	Tomato	nucleus	46.56	44.22
KRG92250	Soybean	cytosol	39.15	38.24
KRH34549	Soybean	nucleus	37.57	36.32
VIT_05s0049g01950.t01	Wine grape	plastid	44.44	31.64
HORVU5Hr1G031990.1	Barley	nucleus	8.2	26.27
TraesCS2D01G363900.1	Wheat	mitochondrion, plastid	17.99	25.19
Os04t0510600-01	Rice	plastid	18.25	24.91
TraesCS2A01G367000.1	Wheat	plastid	17.72	24.81
GSMUA_Achr1P01000_001	Banana	plastid	16.93	23.62
Zm00001d003035_P001	Maize	plastid	17.2	23.38
HORVU2Hr1G088520.1	Barley	cytosol, nucleus, plastid	17.99	22.82
TraesCS5A01G512000.1	Wheat	mitochondrion, plastid	17.2	20.7
TraesCS4B01G342900.1	Wheat	mitochondrion	16.67	20.0
EES12482	Sorghum	nucleus	17.2	19.7
GSMUA_Achr5P15660_001	Banana	plastid	15.08	19.66
Os03t0140700-01	Rice	plastid	17.2	19.17
EER92881	Sorghum	plastid	16.93	18.88
HORVU4Hr1G084230.1	Barley	mitochondrion, plastid	16.67	18.48
Zm00001d027613_P002	Maize	plastid	16.67	17.7
Solyc09g064630.2.1	Tomato	plastid	15.87	16.81
Solyc07g008210.2.1	Tomato	cytosol, nucleus, plastid	9.79	16.09
Solyc06g068130.2.1	Tomato	plastid	9.79	15.42
Solyc03g116670.2.1	Tomato	nucleus	12.43	14.92
Solyc08g076730.2.1	Tomato	plastid	11.38	14.24
Solyc05g052700.2.1	Tomato	extracellular	10.32	8.65
Solyc06g076850.2.1	Tomato	plastid	11.11	7.62

Protein Annotations

EnsemblPlants:Solyc03g005710.1.1	EnsemblPlantsGene:Solyc03g005710.1	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR011990	InterPro:IPR013026	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR26312	PANTHER:PTHR26312:SF78
PFscan:PS50293	SEG:seg	SUPFAM:SSF48452	UniParc:UPI0002769268	UniProt:K4BDZ5	MapMan:35.2

Description

No Description!

Coordinates

chr3:-:502006..505012

Molecular Weight (calculated)

42544.3 Da

IEP (calculated)

4.152

GRAVY (calculated)

-0.544

Length

378 amino acids

Sequence
(BLAST)

001: MINDGKLVRA VTIGNEIEDL ASDDFSFGKC IMDLIKEDDD NEDCDEKEDK ETEEQNEPVC PMYLAAGFGI DVSGMKSLTE GGLMRAGHGA DIVPLNFDEM
101: GDVEAHYKSL LEEYPFNPLV LRNYAQLLQS KGDLSGAEEY YFQATLANPQ DGDILSQYAT LVWQLHHDKA MSLQHMLIFF GRSIMMTTST NTQLDETKET
201: EEVATSHNMY FEQDNRQASP LLNLAAGFGI GNCGFSGGMT LNELIAAEDY YKSVIQENPN NPLVLRKYAQ FLDQCKGDLG GAKEYYSRAV LTDASDGEII
301: SQYANFIWHL HHDQNKASSH FKRAVQASPG NCDVLASYAR FLWETEEDED EDEDKDKESN NYKYQFQYFH GVMVTPNA

Best Arabidopsis Sequence Match ( AT1G04530.1 )
(BLAST)

001: MLKSEASLSI YCDSGDGFKS EDPVTGIEEN LERTVTIGDA IDGGEFSFAK HKEEDSGEGE RGVFEEVIKK LGIGVRDELG FEIERPPSPP MHLAAGLGID
101: KFDLYGSEIK FDLPGYDDKN CGDYYKGMLE EYPLHPLLLK NYAKFLEYKG DLSGAEEYYH KCTVVEPSDG VALANYGRLV MKLHQDEAKA MSYFERAVQA
201: SPDDSIVLAA YASFLWEINA DDDDEDDDED DDESSGQGKD EFEADAAGKG KSSLSKTEDG ETLCRYAKAF WSINNDHEKA LFYFEKAVEA SPNDSIILGE
301: YARFLWEIDE

Arabidopsis Description

TPR4Tetratricopeptide repeat (TPR)-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q8VZ31]
SUBAcon: [cytoskeleton,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.