Factsheet for Os03t0140700-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 2
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G512000.1	Wheat	mitochondrion, plastid	68.44	73.89
TraesCS4B01G342900.1	Wheat	mitochondrion	68.44	73.65
EER92881	Sorghum	plastid	73.45	73.45
Zm00001d027613_P002	Maize	plastid	72.27	68.82
HORVU4Hr1G084230.1	Barley	mitochondrion, plastid	65.78	65.4
HORVU5Hr1G031990.1	Barley	nucleus	22.12	63.56
VIT_07s0005g04340.t01	Wine grape	cytosol, mitochondrion, nucleus	20.35	57.02
GSMUA_Achr1P01000_001	Banana	plastid	37.46	46.86
GSMUA_Achr5P15660_001	Banana	plastid	37.76	44.14
Os04t0510600-01	Rice	plastid	33.33	40.79
KRG95736	Soybean	cytosol, nucleus, plastid	25.37	40.38
KRH67454	Soybean	nucleus	38.94	36.97
Solyc09g064630.2.1	Tomato	plastid	37.46	35.57
PGSC0003DMT400022129	Potato	plastid	37.46	35.28
Os10t0576600-01	Rice	plastid	20.65	30.84
Os06t0606700-00	Rice	plastid	24.48	29.86
CDY18241	Canola	nucleus	21.83	25.52
CDX89816	Canola	nucleus	21.53	25.09
CDY59180	Canola	cytosol	12.98	24.86
AT1G04530.1	Thale cress	cytoskeleton, cytosol, nucleus	22.12	24.19
VIT_05s0049g01950.t01	Wine grape	plastid	36.87	23.54
Bra015324.1-P	Field mustard	nucleus	21.83	23.2
Os04t0496700-00	Rice	nucleus	13.86	22.82
KRG92250	Soybean	cytosol	25.07	21.96
KRH34549	Soybean	nucleus	24.78	21.48
Os07t0542800-00	Rice	cytosol, mitochondrion, nucleus, plastid	15.34	21.14
Solyc09g090930.2.1	Tomato	nucleus	24.19	20.6
PGSC0003DMT400003940	Potato	nucleus	24.19	20.4
Solyc03g005710.1.1	Tomato	cytosol	19.17	17.2
PGSC0003DMT400035002	Potato	plastid	34.22	16.38
Os10t0501900-01	Rice	plastid	17.11	15.98
Os05t0447700-01	Rice	plastid	19.76	13.84
Os01t0855200-01	Rice	plastid	20.35	13.48
Os08t0382600-00	Rice	mitochondrion	2.95	5.71

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.2	EntrezGene:4331573	ProteinID:ABF93900.1	EMBL:AK070000	ProteinID:BAF10836.1
ProteinID:BAS82222.1	ProteinID:EAZ25528.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR011990
InterPro:IPR013026	EnsemblPlantsGene:Os03g0140700	EnsemblPlants:Os03t0140700-01	PFscan:PS50293	PANTHER:PTHR26312	PANTHER:PTHR26312:SF89
UniProt:Q10RZ6	SUPFAM:SSF48452	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0000DB4C26	RefSeq:XP_015627885.1
SEG:seg	:	:	:	:	:

Description

Tetratricopeptide-like helical domain containing protein. (Os03t0140700-01)

Coordinates

chr3:+:2248907..2250627

Molecular Weight (calculated)

35555.3 Da

IEP (calculated)

4.639

GRAVY (calculated)

-0.524

Length

339 amino acids

Sequence
(BLAST)

001: MLVRSASTPV LGALLPSGSH SPAVSSPAVH FFADSSPTVS YHPPTISCRL TPGGSDAHDR SLGGLRRACS DGNLAALGAS GDDDHHHHLP PSGKCAPRSK
101: PTTLETIQSF TQRGGASTDE EEEEDDDDGD HESAEQELSF GKFRFSGSST FAQVEHPLFL ARGLGIDRLG SGLLSADGGS GGSDGGGGGG AGGSYLVTSD
201: NGGNRSDIEM HYKKMIEEDP CNGLFLRNYA QFLYQIKGDS RKAEEYYSRA ILADPNDGEL LSEYAKLVWD VHRDEDRASS YFERAARASP QNSHVLAAHA
301: AFLWDTDDGD GPEGSSSDAL GYAGFAAAAA HSSLASATT

Best Arabidopsis Sequence Match ( AT4G17940.1 )
(BLAST)

001: MKSLLMRTGS MPVLQNRLIS GGSSRKMTPI SRTNSVESLS SYGERFAGGK ISIEVKANVG MRRVLSESDV IRSERMLKRV GSKPSPARIP EDDEAGEEEI
101: RFADGWGSMI SGGLPVEEKC FTGGGVGGGS GYSGGYGNGG GGGYEDKSKI GDYYREMLRS NPNNSLLLMN YGKFLYEVEK DAEGAEEYYG RAILENPGDG
201: EALSMYGRLI WETKRDEKRA QGYFDQAVNA SPNDCMVLGS YARFMWEAED DDDDDEEEEE EEWMAASPLM VSAV

Arabidopsis Description

Tetratricopeptide repeat (TPR)-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q0WUZ1]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.