Factsheet for VIT_07s0005g04340.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU5Hr1G031990.1	Barley	nucleus	41.32	42.37
KRG95736	Soybean	cytosol, nucleus, plastid	67.77	38.5
GSMUA_Achr1P01000_001	Banana	plastid	63.64	28.41
Os04t0510600-01	Rice	plastid	57.02	24.91
Zm00001d003035_P001	Maize	plastid	57.02	24.82
TraesCS2D01G363900.1	Wheat	mitochondrion, plastid	55.37	24.81
TraesCS2A01G367000.1	Wheat	plastid	55.37	24.81
VIT_02s0012g01590.t01	Wine grape	nucleus	43.8	24.65
KRH67454	Soybean	nucleus	66.94	22.69
HORVU2Hr1G088520.1	Barley	cytosol, nucleus, plastid	54.55	22.15
EES12482	Sorghum	nucleus	59.5	21.82
TraesCS5A01G512000.1	Wheat	mitochondrion, plastid	56.2	21.66
CDY18241	Canola	nucleus	50.41	21.03
CDX89816	Canola	nucleus	50.41	20.96
TraesCS4B01G342900.1	Wheat	mitochondrion	54.55	20.95
Solyc09g064630.2.1	Tomato	plastid	61.16	20.73
PGSC0003DMT400022129	Potato	plastid	61.16	20.56
EER92881	Sorghum	plastid	57.02	20.35
Os03t0140700-01	Rice	plastid	57.02	20.35
GSMUA_Achr5P15660_001	Banana	plastid	48.76	20.34
HORVU4Hr1G084230.1	Barley	mitochondrion, plastid	54.55	19.35
AT1G04530.1	Thale cress	cytoskeleton, cytosol, nucleus	49.59	19.35
Bra015324.1-P	Field mustard	nucleus	50.41	19.12
Zm00001d027613_P002	Maize	plastid	56.2	19.1
VIT_11s0016g05430.t01	Wine grape	plastid	45.45	19.1
VIT_09s0002g06810.t01	Wine grape	cytosol	46.28	18.3
CDY59180	Canola	cytosol	21.49	14.69
VIT_05s0049g01950.t01	Wine grape	plastid	58.68	13.37
VIT_13s0067g00240.t01	Wine grape	cytosol	32.23	9.77
VIT_06s0004g06290.t01	Wine grape	plastid	33.88	7.75

Protein Annotations

ArrayExpress:VIT_07s0005g04340	EMBL:FN596502	EnsemblPlants:VIT_07s0005g04340.t01	EnsemblPlantsGene:VIT_07s0005g04340	Gene3D:1.25.40.10	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR011990	InterPro:IPR013026	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf
PANTHER:PTHR26312	PANTHER:PTHR26312:SF89	PFscan:PS50293	ProteinID:CBI37190	ProteinID:CBI37190.3	SUPFAM:SSF48452
TIGR:TC56244	unigene:Vvi.7080	UniParc:UPI0001BE4961	UniProt:D7U373	MapMan:35.2	:

Description

No Description!

Coordinates

chr7:-:7445792..7446987

Molecular Weight (calculated)

13774.8 Da

IEP (calculated)

4.127

GRAVY (calculated)

-0.512

Length

121 amino acids

Sequence
(BLAST)

001: MLEENPSNPL FLRNYAQFLY QSKHDLQAAE EYLCRAILAD PRDGEILSQY AKLVWELHHD QDRASSYFER AVQAAPEDSH VQAAYASFLW QTEEDDDDDG
101: TCHVDAMPTL LHGEAMASVI S

Best Arabidopsis Sequence Match ( AT5G20190.1 )
(BLAST)

001: MLLRSASTPL LNSLVHVSSP RDSPIETVES VHQIQRHRSI TLSASSSSCC YSPMSVHSSD DSSRRMKRTA SDSDLRHLTS TKPPVSKFLS GGALMEDVDE
101: GIGFGLIRTS SYDGISWALD EDTEVAGGGG GGMFHGGGKG RSGGRSDGGD GGDDNTDVHY RKMIEANPGN GIFLSNYAKF LKEVRKDYLK AEEYCGRAIL
201: VSPNDGNVLA MYAELVWKIH KDSSRAENYF NQAVAAAPED CYVQASYARF LWDAEEEEEE EKEERHEEEL EHQTSRMNFF TGPSPITAMS

Arabidopsis Description

Tetratricopeptide repeat (TPR)-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4K464]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.