Factsheet for VIT_11s0016g05430.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 4
plastid 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH20249	Soybean	plastid	51.74	57.98
GSMUA_Achr2P15930_001	Banana	cytosol	23.96	57.5
KRH03683	Soybean	plastid	50.35	55.56
VIT_09s0002g06810.t01	Wine grape	cytosol	53.82	50.65
Bra020090.1-P	Field mustard	cytosol	33.33	49.48
AT5G20190.1	Thale cress	plastid	46.88	46.55
Bra002280.1-P	Field mustard	plastid	45.83	46.48
CDX88849	Canola	plastid	43.06	46.1
CDX92483	Canola	plastid	44.79	46.07
CDY60380	Canola	plastid	42.71	45.9
VIT_07s0005g04340.t01	Wine grape	cytosol, mitochondrion, nucleus	19.1	45.45
Bra006547.1-P	Field mustard	plastid	43.06	45.42
CDY35827	Canola	plastid	45.49	45.02
CDY45101	Canola	plastid	43.75	44.52
PGSC0003DMT400079441	Potato	plastid	35.76	44.4
Solyc07g008210.2.1	Tomato	cytosol, nucleus, plastid	34.38	43.04
VIT_02s0012g01590.t01	Wine grape	nucleus	28.12	37.67
Os06t0606700-00	Rice	plastid	36.11	37.41
TraesCS7A01G377700.1	Wheat	mitochondrion	36.46	36.59
HORVU7Hr1G090280.1	Barley	mitochondrion	36.46	36.46
TraesCS7D01G374500.1	Wheat	mitochondrion	35.76	36.4
Zm00001d046530_P001	Maize	plastid	36.81	35.69
TraesCS7B01G279400.1	Wheat	mitochondrion	35.76	35.15
EER88623	Sorghum	mitochondrion	36.81	33.12
Os04t0496700-00	Rice	nucleus	19.1	26.7
Os07t0542800-00	Rice	cytosol, mitochondrion, nucleus, plastid	18.75	21.95
VIT_05s0049g01950.t01	Wine grape	plastid	31.6	17.14
VIT_06s0004g06290.t01	Wine grape	plastid	22.57	12.29
VIT_13s0067g00240.t01	Wine grape	cytosol	15.97	11.53

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100257716	wikigene:100257716	MapMan:35.2	ProteinID:CBI28211	ProteinID:CBI28211.3
UniProt:D7TC26	EMBL:FN595756	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR011990
InterPro:IPR013026	EntrezGene:LOC100257716	wikigene:LOC100257716	PFscan:PS50293	PANTHER:PTHR26312	PANTHER:PTHR26312:SF75
SUPFAM:SSF48452	TIGR:TC61309	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	UniParc:UPI00019844C3	ArrayExpress:VIT_11s0016g05430
EnsemblPlantsGene:VIT_11s0016g05430	EnsemblPlants:VIT_11s0016g05430.t01	unigene:Vvi.9580	RefSeq:XP_002285275	RefSeq:XP_002285275.1	SEG:seg

Description

No Description!

Coordinates

chr11:+:4812624..4814041

Molecular Weight (calculated)

31329.2 Da

IEP (calculated)

4.438

GRAVY (calculated)

-0.568

Length

288 amino acids

Sequence
(BLAST)

001: MLLRSSSTPI LNSWPPNSKE SSSEPEMVPQ ILLSRSISLT TSSLSSVEGS SKKMSRALSE TDLRELSLPK RKPITKTVNR LSSLPVDERE EEDSCPISRT
101: ASYGGLWWGV GSDAGCEGVC VEGGSEGGGG SDGGYAHGKS GYGDSNNGNG NMESYYRTMI EANPGNALLL GNYARFLKEV RGDYIKAEEY CGRAILANPN
201: DGNILSLFAD LIWQVHKDSD RAESYFDQAV KASPDDCFVL ASYAHFLWEE EEEEEEKERV EGEYMKETSS HPVFRGASPS LPPLAAAS

Best Arabidopsis Sequence Match ( AT5G20190.1 )
(BLAST)

001: MLLRSASTPL LNSLVHVSSP RDSPIETVES VHQIQRHRSI TLSASSSSCC YSPMSVHSSD DSSRRMKRTA SDSDLRHLTS TKPPVSKFLS GGALMEDVDE
101: GIGFGLIRTS SYDGISWALD EDTEVAGGGG GGMFHGGGKG RSGGRSDGGD GGDDNTDVHY RKMIEANPGN GIFLSNYAKF LKEVRKDYLK AEEYCGRAIL
201: VSPNDGNVLA MYAELVWKIH KDSSRAENYF NQAVAAAPED CYVQASYARF LWDAEEEEEE EKEERHEEEL EHQTSRMNFF TGPSPITAMS

Arabidopsis Description

Tetratricopeptide repeat (TPR)-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4K464]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.