Factsheet for Bra020090.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol, nucleus
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY45101	Canola	plastid	96.91	66.43
GSMUA_Achr2P15930_001	Banana	cytosol	35.05	56.67
Bra002280.1-P	Field mustard	plastid	80.93	55.28
AT5G20190.1	Thale cress	plastid	79.9	53.45
Bra006547.1-P	Field mustard	plastid	72.68	51.65
KRH20249	Soybean	plastid	48.45	36.58
Solyc07g008210.2.1	Tomato	cytosol, nucleus, plastid	43.3	36.52
PGSC0003DMT400079441	Potato	plastid	43.3	36.21
KRH03683	Soybean	plastid	48.45	36.02
VIT_11s0016g05430.t01	Wine grape	plastid	49.48	33.33
VIT_09s0002g06810.t01	Wine grape	cytosol	51.55	32.68
Bra011339.1-P	Field mustard	plastid	39.18	31.15
TraesCS7D01G374500.1	Wheat	mitochondrion	45.36	31.1
TraesCS7A01G377700.1	Wheat	mitochondrion	45.88	31.01
Os06t0606700-00	Rice	plastid	43.3	30.22
HORVU7Hr1G090280.1	Barley	mitochondrion	44.85	30.21
TraesCS7B01G279400.1	Wheat	mitochondrion	44.33	29.35
Bra013269.1-P	Field mustard	mitochondrion	34.02	28.82
Zm00001d046530_P001	Maize	plastid	42.78	27.95
Bra008495.1-P	Field mustard	mitochondrion, nucleus	43.3	27.81
Bra035194.1-P	Field mustard	nucleus	43.81	27.78
EER88623	Sorghum	mitochondrion	43.3	26.25
Os04t0496700-00	Rice	nucleus	27.84	26.21
Bra021028.1-P	Field mustard	plastid	32.99	24.33
Os07t0542800-00	Rice	cytosol, mitochondrion, nucleus, plastid	25.26	19.92
Bra015324.1-P	Field mustard	nucleus	26.29	15.99
Bra039995.1-P	Field mustard	plastid	29.9	11.93
Bra018368.1-P	Field mustard	plastid	27.84	11.56
Bra031567.1-P	Field mustard	plastid	27.32	10.71
Bra015570.1-P	Field mustard	plastid	27.84	10.51
Bra018168.1-P	Field mustard	plastid	24.23	10.26
Bra019495.1-P	Field mustard	plastid	22.68	9.5

Protein Annotations

EnsemblPlants:Bra020090.1	EnsemblPlants:Bra020090.1-P	EnsemblPlantsGene:Bra020090	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR011990	InterPro:IPR013026	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR26312
PANTHER:PTHR26312:SF75	PFscan:PS50293	SEG:seg	SUPFAM:SSF48452	UniParc:UPI0002543356	UniProt:M4DU97
MapMan:35.2	:	:	:	:	:

Description

AT5G20190 (E=2e-063) | binding

Coordinates

chrA02:+:4987482..4988232

Molecular Weight (calculated)

21223.4 Da

IEP (calculated)

4.131

GRAVY (calculated)

-0.484

Length

194 amino acids

Sequence
(BLAST)

001: MEDVEEGIGF GIIRTSSYDG GLAFWTLEEE TEFSGGGGCG GGFVHGGGKG GSDGDDSTDV HYRKMIEANP GNGMFLGNYA KFLKEVRKDY LRAEEYCGRA
101: ILVNPNDGNV LAMYAELVWM IHKDSSRAES YFNQAVAAAP DDCYVQASYA RFLWDADEEE GGEGEKEERH EDELVTQASR MSFFSGLSPI TAMS

Best Arabidopsis Sequence Match ( AT5G20190.1 )
(BLAST)

001: MLLRSASTPL LNSLVHVSSP RDSPIETVES VHQIQRHRSI TLSASSSSCC YSPMSVHSSD DSSRRMKRTA SDSDLRHLTS TKPPVSKFLS GGALMEDVDE
101: GIGFGLIRTS SYDGISWALD EDTEVAGGGG GGMFHGGGKG RSGGRSDGGD GGDDNTDVHY RKMIEANPGN GIFLSNYAKF LKEVRKDYLK AEEYCGRAIL
201: VSPNDGNVLA MYAELVWKIH KDSSRAENYF NQAVAAAPED CYVQASYARF LWDAEEEEEE EKEERHEEEL EHQTSRMNFF TGPSPITAMS

Arabidopsis Description

Tetratricopeptide repeat (TPR)-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4K464]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.