Factsheet for Bra019495.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 3
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY58299	Canola	plastid	95.68	91.34
Bra018168.1-P	Field mustard	plastid	68.47	69.21
AT3G47080.1	Thale cress	plastid	69.11	62.14
Bra018368.1-P	Field mustard	plastid	45.79	45.4
Bra039995.1-P	Field mustard	plastid	45.36	43.21
VIT_06s0004g06290.t01	Wine grape	plastid	47.52	41.59
KRG98335	Soybean	plastid	47.73	41.54
KRH46437	Soybean	plastid	47.08	41.52
Bra015570.1-P	Field mustard	plastid	46.0	41.44
Solyc06g076850.2.1	Tomato	plastid	48.16	40.47
Bra031567.1-P	Field mustard	plastid	43.2	40.4
PGSC0003DMT400078227	Potato	plastid	47.52	39.78
TraesCS3B01G400100.1	Wheat	plastid	35.64	34.45
TraesCS3D01G361500.1	Wheat	plastid	35.64	34.38
TraesCS3A01G368600.1	Wheat	plastid	35.64	34.3
HORVU3Hr1G084970.2	Barley	plastid	35.42	33.95
GSMUA_Achr8P02280_001	Banana	plastid	36.29	33.6
Os01t0855200-01	Rice	plastid	36.72	33.2
GSMUA_Achr9P03650_001	Banana	plastid	36.07	32.94
Os05t0447700-01	Rice	plastid	34.13	32.64
Zm00001d012325_P001	Maize	plastid	35.85	32.17
TraesCS1A01G278600.1	Wheat	plastid	32.4	31.91
TraesCS1D01G277900.1	Wheat	plastid	32.61	31.86
Zm00001d042812_P001	Maize	plastid	35.85	31.74
TraesCS1B01G287500.1	Wheat	plastid	32.83	31.73
GSMUA_Achr11P...	Banana	plastid	34.13	31.66
GSMUA_Achr6P33690_001	Banana	plastid	36.5	31.65
EES01775	Sorghum	plastid	35.42	30.94
HORVU1Hr1G073460.2	Barley	plastid	33.05	29.88
KXG22120	Sorghum	plastid	32.4	29.41
Zm00001d010075_P001	Maize	plastid	32.83	28.95
Zm00001d038274_P002	Maize	plastid	31.1	28.69
GSMUA_Achr5P28840_001	Banana	cytosol	33.48	27.63
Bra020090.1-P	Field mustard	cytosol	9.5	22.68
Bra021028.1-P	Field mustard	plastid	11.45	20.15
Bra011339.1-P	Field mustard	plastid	10.58	20.08
Bra013269.1-P	Field mustard	mitochondrion	9.5	19.21
Bra002280.1-P	Field mustard	plastid	11.45	18.66
Bra006547.1-P	Field mustard	plastid	9.72	16.48
Bra035194.1-P	Field mustard	nucleus	9.5	14.38
Bra008495.1-P	Field mustard	mitochondrion, nucleus	9.29	14.24
Bra015324.1-P	Field mustard	nucleus	9.07	13.17

Protein Annotations

EnsemblPlants:Bra019495.1	EnsemblPlants:Bra019495.1-P	EnsemblPlantsGene:Bra019495	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR011990	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR26312	PANTHER:PTHR26312:SF83	SEG:seg
SUPFAM:SSF48452	UniParc:UPI000253F0E5	UniProt:M4DSK2	MapMan:35.2	:	:

Description

AT3G47080 (E=3e-151) | binding

Coordinates

chrA06:+:12883857..12885419

Molecular Weight (calculated)

52985.7 Da

IEP (calculated)

5.501

GRAVY (calculated)

-0.425

Length

463 amino acids

Sequence
(BLAST)

001: MPKCQSLSQT INSSKRRRYC RRDVYTSVVG GGGGSLSCQT RLNPSTFLGT ESGKVHWSKS CELLKFTKNR TGMQKHYPLR RVCSASFSFF SDQDFSTKMQ
101: ELALQFKIAG EEEDLERNKH QSERIHDKVK LLQESVPGLA LLEAPGIEMV NHSSIKRKAN SVDLPLSLRM IKRKLQEQAL KEASESNSSS IYKAFSSMVF
201: MIDELHSFVL QTKETIFYEE DLQGVVKKDM HASFLWIFQS VFSQTPTLMV YVMILLANFT VHSVASNLAI PASPVTKGQD QMHQRFESTL LGHVVSGHFD
301: KISRLQEIRE DELSLWNSIV EEADQMQDSP VVRDMRLNER TELDDYARTE SLYEISLVQE PNNHLLLANY AQFLYLISQD YDRVEKCFKK AIESEEVDAE
401: TYSKYAVFQW KVLNDLWAAE ENFLEAISAD PTNSFYAANY ANFLWQTGGE ETCYPLESSD SPQ

Best Arabidopsis Sequence Match ( AT3G47080.1 )
(BLAST)

001: MEVKVATTTS FHWSGRHTAI PQCPSFSQTL TSSKRRRSRG IAGDVSVGGG SLRLKPSTFL GTQSGKLHRS KSCELWQFSN STTKKIRTDV KKKHNPLRRV
101: CSASSGFFSS DEAFSVKMQE LASQFRNAGD EEEEENKQKS EAVDNDNDSN NHRFGSLKLL QESVPGLASL EAPWAEMVNH SSIERKANSV DLPLSLRIIK
201: RKLQEEALKK ASATTYCSIN RAFSSMVFMI EELHSFALQT RVGVLKQVKK EMHASLLWIF QRVFSQTPTL MVYVMILLAN YTVHSVASNL PIAASPPVVN
301: KGPDQTQQRI DFSSLKESTK LDGSKWLGSI NFDKVSHLPR HRDSVSGEGM REEEVSLWNS MVEEADQMQD SSVDRDMRLR LVSPITARIE LDDYANYTRT
401: ELLYKIGLAQ EPDNHLLLAN YAQFLYLVTQ DHERAENCFK KAIESEDVDA ETYSKYAIFL WKVRNDLWAA EENFLEAISA DPTNSFYAAN YANFLWNTGG
501: EETCFPLEDS TQEMV

Arabidopsis Description

Tetratricopeptide repeat (TPR)-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9SD65]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.