Factsheet for Bra021028.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 1
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX76550	Canola	plastid	98.48	98.48
Bra013269.1-P	Field mustard	mitochondrion	68.44	78.6
AT4G17940.1	Thale cress	mitochondrion	76.81	73.72
VIT_02s0012g01590.t01	Wine grape	nucleus	44.49	54.42
GSMUA_Achr4P27320_001	Banana	plastid	43.73	43.4
Solyc08g076730.2.1	Tomato	plastid	49.05	42.72
PGSC0003DMT400045174	Potato	plastid	49.05	42.72
GSMUA_Achr5P03500_001	Banana	plastid	40.3	42.57
KRH39558	Soybean	plastid	40.3	41.9
TraesCS1A01G194200.1	Wheat	plastid	34.22	38.14
TraesCS1B01G209200.1	Wheat	plastid	33.46	37.13
KRH74400	Soybean	nucleus, plastid	40.68	36.77
Os10t0576600-01	Rice	plastid	31.18	36.12
Zm00001d030086_P001	Maize	plastid	31.94	33.73
Bra020090.1-P	Field mustard	cytosol	24.33	32.99
EER91874	Sorghum	plastid	30.42	31.01
Bra006547.1-P	Field mustard	plastid	30.04	28.94
Bra011339.1-P	Field mustard	plastid	25.86	27.87
Bra002280.1-P	Field mustard	plastid	29.66	27.46
Bra035194.1-P	Field mustard	nucleus	28.52	24.51
Bra008495.1-P	Field mustard	mitochondrion, nucleus	26.24	22.85
HORVU1Hr1G050780.2	Barley	plastid	27.76	19.16
Bra015324.1-P	Field mustard	nucleus	22.81	18.81
Bra018368.1-P	Field mustard	plastid	23.57	13.28
Bra031567.1-P	Field mustard	plastid	24.33	12.93
Bra039995.1-P	Field mustard	plastid	23.57	12.76
Bra015570.1-P	Field mustard	plastid	23.57	12.06
Bra019495.1-P	Field mustard	plastid	20.15	11.45
Bra018168.1-P	Field mustard	plastid	19.39	11.14

Protein Annotations

EnsemblPlants:Bra021028.1	EnsemblPlants:Bra021028.1-P	EnsemblPlantsGene:Bra021028	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR011990	InterPro:IPR013026	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR26312
PANTHER:PTHR26312:SF53	PFscan:PS50293	SEG:seg	SUPFAM:SSF48452	UniParc:UPI000254727D	UniProt:M4DWY2
MapMan:35.2	:	:	:	:	:

Description

AT4G17940 (E=8e-084) | binding

Coordinates

chrA08:+:10394415..10395344

Molecular Weight (calculated)

28624.3 Da

IEP (calculated)

4.463

GRAVY (calculated)

-0.594

Length

263 amino acids

Sequence
(BLAST)

001: MTSLLMRAGS MPVQTGFIPS RKASTTISRH NSVESLPSHG GERFPGGKIS IDVKATSGLR RVLSESDVIR SERMSKSVVS KPSPANIPEE EDEIRFSDGW
101: GSLIWKESGV PAEEQGVSGG GGSGYSGGNG NGGDGYDGRS KIGDYYREML KSNPNNSLLL MNYGKFLYEV EKDAERAEEY YGRAILESPG DGEALSMYGK
201: LIWETKRDEK RARGYFDQAV IASPGDCMVM GSYAHFMWEA EDEDGDEEEE DLMVASPALV SAV

Best Arabidopsis Sequence Match ( AT4G17940.1 )
(BLAST)

001: MKSLLMRTGS MPVLQNRLIS GGSSRKMTPI SRTNSVESLS SYGERFAGGK ISIEVKANVG MRRVLSESDV IRSERMLKRV GSKPSPARIP EDDEAGEEEI
101: RFADGWGSMI SGGLPVEEKC FTGGGVGGGS GYSGGYGNGG GGGYEDKSKI GDYYREMLRS NPNNSLLLMN YGKFLYEVEK DAEGAEEYYG RAILENPGDG
201: EALSMYGRLI WETKRDEKRA QGYFDQAVNA SPNDCMVLGS YARFMWEAED DDDDDEEEEE EEWMAASPLM VSAV

Arabidopsis Description

Tetratricopeptide repeat (TPR)-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q0WUZ1]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.