Factsheet for Bra035194.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
plasma membrane 1
cytosol 1
nucleus 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX87295	Canola	nucleus	82.03	99.21
Bra008495.1-P	Field mustard	mitochondrion, nucleus	76.8	77.81
AT1G80130.1	Thale cress	nucleus	73.53	73.77
GSMUA_Achr2P15930_001	Banana	cytosol	18.63	47.5
Bra020090.1-P	Field mustard	cytosol	27.78	43.81
Bra002280.1-P	Field mustard	plastid	38.89	41.9
KRH09728	Soybean	cytosol	15.36	41.59
KRH23575	Soybean	plastid	34.31	40.86
Bra006547.1-P	Field mustard	plastid	35.95	40.29
Bra011339.1-P	Field mustard	plastid	31.05	38.93
PGSC0003DMT400073455	Potato	plastid	30.39	38.91
Solyc06g068130.2.1	Tomato	plastid	29.74	37.92
PGSC0003DMT400001660	Potato	mitochondrion, nucleus, plastid	37.91	36.25
KRH47446	Soybean	plastid	36.93	35.87
KRH44461	Soybean	plastid	36.93	35.87
Solyc03g116670.2.1	Tomato	nucleus	36.27	35.24
HORVU7Hr1G090280.1	Barley	mitochondrion	32.68	34.72
Os06t0606700-00	Rice	plastid	30.72	33.81
TraesCS7A01G377700.1	Wheat	mitochondrion	31.37	33.45
TraesCS7D01G374500.1	Wheat	mitochondrion	30.72	33.22
TraesCS7B01G279400.1	Wheat	mitochondrion	31.7	33.11
Bra013269.1-P	Field mustard	mitochondrion	24.51	32.75
Zm00001d046530_P001	Maize	plastid	31.7	32.66
EER88623	Sorghum	mitochondrion	31.7	30.31
Bra021028.1-P	Field mustard	plastid	24.51	28.52
Os04t0496700-00	Rice	nucleus	15.36	22.82
Os07t0542800-00	Rice	cytosol, mitochondrion, nucleus, plastid	15.36	19.11
Bra015324.1-P	Field mustard	nucleus	19.28	18.5
Bra018368.1-P	Field mustard	plastid	18.63	12.21
Bra039995.1-P	Field mustard	plastid	18.63	11.73
Bra015570.1-P	Field mustard	plastid	19.61	11.67
Bra031567.1-P	Field mustard	plastid	18.63	11.52
Bra018168.1-P	Field mustard	plastid	16.34	10.92
Bra019495.1-P	Field mustard	plastid	14.38	9.5

Protein Annotations

EnsemblPlants:Bra035194.1	EnsemblPlants:Bra035194.1-P	EnsemblPlantsGene:Bra035194	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR011990	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR26312	PANTHER:PTHR26312:SF75	SEG:seg
SUPFAM:SSF48452	UniParc:UPI0002541E9B	UniProt:M4F297	MapMan:35.2	:	:

Description

AT1G80130 (E=3e-095) | binding

Coordinates

chrA07:+:22530092..22531428

Molecular Weight (calculated)

33779.9 Da

IEP (calculated)

4.925

GRAVY (calculated)

-0.740

Length

306 amino acids

Sequence
(BLAST)

001: MLLRSTSAPI LNSWLPQHCS RESSPEPESQ LQRRNRSLSI LSSKSIDRHT GELLHQTLCV HKESVHKSSN KENDGNDVIS RRQRRSSLDE SSHGTVYRKK
101: ILDPSSTFLM ERLFSSSGQG EKVCDDDDRL ETLVSGGSDG MGSSGGKICT GGGVGGSGVD GGGSEDATDV YYREMINLNP GNSILTGNYA KFLKEVRGDM
201: KRAEEYCKRA ILGSTNDGNV LSLYADLILH NHGDSKRAHS YFQQAAQMSP EDCYVQASYA RFLWDVEEDE DEVDGEEEQR SDEIGIMPST TTFRDFSQLS
301: AISTQS

Best Arabidopsis Sequence Match ( AT1G80130.1 )
(BLAST)

001: MLLRSTSAPI LNSWLPQHCS RESSPEPESQ LWRRSTSLSL FSSKSIDGHT GEQLHQALSD NKEIIILKSK SNEHSYKTPT SSRQRRSSLD ETRYTKKTLD
101: RSSPFLVERL FSSSGQGDKA SSNDRLETLV SGGGGGMGGS GGNICNGGGG VGGSGVDGGR SEDATDTYYR EMIDSNPGNS LLTGNYAKFL KEVKGDMKKA
201: EEYCERAILG NTNDGNVLSL YADLILHNHQ DRQRAHSYYK QAVKMSPEDC YVQASYARFL WDVDEDEEDE ALGEEEENLS DETGHVPPTT MFRDFPQHTS
301: ITASS

Arabidopsis Description

F18B13.21 protein [Source:UniProtKB/TrEMBL;Acc:Q9SSC6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.