Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 1
- mitochondrion 2
- nucleus 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX87295 | Canola | nucleus | 63.28 | 76.28 |
| CDY39992 | Canola | nucleus | 74.1 | 73.86 |
| Bra035194.1-P | Field mustard | nucleus | 73.77 | 73.53 |
| Bra008495.1-P | Field mustard | mitochondrion, nucleus | 70.82 | 71.52 |
| CDY37568 | Canola | nucleus | 71.48 | 69.43 |
| CDY41120 | Canola | mitochondrion | 69.18 | 68.73 |
| GSMUA_Achr2P15930_001 | Banana | cytosol | 20.33 | 51.67 |
| KRH09728 | Soybean | cytosol | 17.38 | 46.9 |
| KRH23575 | Soybean | plastid | 36.07 | 42.8 |
| AT4G32340.1 | Thale cress | mitochondrion | 32.46 | 41.6 |
| PGSC0003DMT400073455 | Potato | plastid | 31.8 | 40.59 |
| AT5G20190.1 | Thale cress | plastid | 38.36 | 40.34 |
| Solyc06g068130.2.1 | Tomato | plastid | 31.48 | 40.0 |
| PGSC0003DMT400001660 | Potato | mitochondrion, nucleus, plastid | 41.64 | 39.69 |
| Solyc03g116670.2.1 | Tomato | nucleus | 40.33 | 39.05 |
| KRH44461 | Soybean | plastid | 38.69 | 37.46 |
| KRH47446 | Soybean | plastid | 37.38 | 36.19 |
| Zm00001d046530_P001 | Maize | plastid | 34.1 | 35.02 |
| Os06t0606700-00 | Rice | plastid | 31.8 | 34.89 |
| HORVU7Hr1G090280.1 | Barley | mitochondrion | 32.79 | 34.72 |
| TraesCS7D01G374500.1 | Wheat | mitochondrion | 32.13 | 34.63 |
| TraesCS7A01G377700.1 | Wheat | mitochondrion | 31.8 | 33.8 |
| EER88623 | Sorghum | mitochondrion | 34.75 | 33.12 |
| TraesCS7B01G279400.1 | Wheat | mitochondrion | 31.8 | 33.11 |
| AT4G17940.1 | Thale cress | mitochondrion | 26.23 | 29.2 |
| Os04t0496700-00 | Rice | nucleus | 17.7 | 26.21 |
| Os07t0542800-00 | Rice | cytosol, mitochondrion, nucleus, plastid | 16.07 | 19.92 |
| AT1G04530.1 | Thale cress | cytoskeleton, cytosol, nucleus | 19.67 | 19.35 |
| AT1G07280.1 | Thale cress | plastid | 20.66 | 11.41 |
| AT2G29670.2 | Thale cress | plastid | 19.67 | 11.19 |
| AT3G47080.1 | Thale cress | plastid | 15.08 | 8.93 |
Protein Annotations
| Gene3D:1.25.40.10 | MapMan:35.2 | EntrezGene:844353 | ProteinID:AAD55471.1 | ProteinID:AEE36360.1 | ArrayExpress:AT1G80130 |
| EnsemblPlantsGene:AT1G80130 | RefSeq:AT1G80130 | TAIR:AT1G80130 | RefSeq:AT1G80130-TAIR-G | EnsemblPlants:AT1G80130.1 | TAIR:AT1G80130.1 |
| EMBL:AY034991 | EMBL:AY063018 | EMBL:AY087456 | Unigene:At.23459 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0006950 | GO:GO:0006979 | GO:GO:0008150 | GO:GO:0016020 |
| InterPro:IPR011990 | RefSeq:NP_565230.1 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000293 | PO:PO:0001016 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007095 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009015 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0020030 |
| PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PANTHER:PTHR26312 | PANTHER:PTHR26312:SF75 | UniProt:Q9SSC6 |
| SUPFAM:SSF48452 | InterPro:TPR-like_helical_dom_sf | UniParc:UPI00000A5EB7 | SEG:seg | : | : |
Description
F18B13.21 protein [Source:UniProtKB/TrEMBL;Acc:Q9SSC6]
Coordinates
chr1:-:30140912..30142697
Molecular Weight (calculated)
33596.5 Da
IEP (calculated)
5.011
GRAVY (calculated)
-0.831
Length
305 amino acids
Sequence
(BLAST)
(BLAST)
001: MLLRSTSAPI LNSWLPQHCS RESSPEPESQ LWRRSTSLSL FSSKSIDGHT GEQLHQALSD NKEIIILKSK SNEHSYKTPT SSRQRRSSLD ETRYTKKTLD
101: RSSPFLVERL FSSSGQGDKA SSNDRLETLV SGGGGGMGGS GGNICNGGGG VGGSGVDGGR SEDATDTYYR EMIDSNPGNS LLTGNYAKFL KEVKGDMKKA
201: EEYCERAILG NTNDGNVLSL YADLILHNHQ DRQRAHSYYK QAVKMSPEDC YVQASYARFL WDVDEDEEDE ALGEEEENLS DETGHVPPTT MFRDFPQHTS
301: ITASS
101: RSSPFLVERL FSSSGQGDKA SSNDRLETLV SGGGGGMGGS GGNICNGGGG VGGSGVDGGR SEDATDTYYR EMIDSNPGNS LLTGNYAKFL KEVKGDMKKA
201: EEYCERAILG NTNDGNVLSL YADLILHNHQ DRQRAHSYYK QAVKMSPEDC YVQASYARFL WDVDEDEEDE ALGEEEENLS DETGHVPPTT MFRDFPQHTS
301: ITASS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.