CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
mitochondrion 1
plastid 5
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH09728	Soybean	cytosol	39.69	90.27
GSMUA_Achr2P15930_001	Banana	cytosol	26.46	56.67
KRH47446	Soybean	plastid	60.31	49.21
KRH44461	Soybean	plastid	59.14	48.25
KRH03683	Soybean	plastid	41.63	41.0
KRH20249	Soybean	plastid	39.3	39.3
Bra008495.1-P	Field mustard	mitochondrion, nucleus	43.97	37.42
PGSC0003DMT400073455	Potato	plastid	34.63	37.24
Solyc06g068130.2.1	Tomato	plastid	34.63	37.08
Solyc03g116670.2.1	Tomato	nucleus	45.14	36.83
CDY41120	Canola	mitochondrion	43.58	36.48
AT1G80130.1	Thale cress	nucleus	42.8	36.07
PGSC0003DMT400001660	Potato	mitochondrion, nucleus, plastid	44.75	35.94
CDY37568	Canola	nucleus	43.58	35.67
CDX87295	Canola	nucleus	35.02	35.57
CDY39992	Canola	nucleus	41.25	34.64
Os06t0606700-00	Rice	plastid	37.35	34.53
Bra035194.1-P	Field mustard	nucleus	40.86	34.31
TraesCS7D01G374500.1	Wheat	mitochondrion	37.74	34.28
HORVU7Hr1G090280.1	Barley	mitochondrion	38.13	34.03
TraesCS7A01G377700.1	Wheat	mitochondrion	37.35	33.45
TraesCS7B01G279400.1	Wheat	mitochondrion	38.13	33.45
Zm00001d046530_P001	Maize	plastid	38.52	33.33
EER88623	Sorghum	mitochondrion	38.52	30.94
KRH39558	Soybean	plastid	29.18	29.64
KRG95736	Soybean	cytosol, nucleus, plastid	22.57	27.23
Os04t0496700-00	Rice	nucleus	21.01	26.21
KRH74400	Soybean	nucleus, plastid	29.18	25.77
Os07t0542800-00	Rice	cytosol, mitochondrion, nucleus, plastid	20.62	21.54
KRH67454	Soybean	nucleus	28.79	20.73
KRH34549	Soybean	nucleus	20.62	13.55
KRG92250	Soybean	cytosol	20.23	13.44
KRH46437	Soybean	plastid	22.96	11.24
KRG98335	Soybean	plastid	22.96	11.09
KRH73162	Soybean	mitochondrion	19.84	10.58
KRH14978	Soybean	cytosol, plastid	19.46	10.48

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100785496	MapMan:35.2	EMBL:ACUP02008474	EnsemblPlantsGene:GLYMA_13G365300	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	UniProt:I1M5T8	InterPro:IPR011990	InterPro:IPR013026	EnsemblPlants:KRH23575
ProteinID:KRH23575	ProteinID:KRH23575.1	EMBL:KT031226	PFAM:PF14559	PFscan:PS50293	PANTHER:PTHR26312
PANTHER:PTHR26312:SF75	SUPFAM:SSF48452	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	UniParc:UPI000233B6B8	SEG:seg

Description

hypothetical protein

Coordinates

chr13:+:45146165..45148920

Molecular Weight (calculated)

28617.5 Da

IEP (calculated)

6.175

GRAVY (calculated)

-0.684

Length

257 amino acids

Sequence
(BLAST)

001: MLLRTSTVPI PSSWLPHSKE YLPRTLSTPL KNLLHTDPHN HTPSKPPKKP CMSPIKVLEN HRSIKMKESD DELFSSSGLD NKLEGSSRLQ TLVMGGGMGS
101: GGVRVCGGRG SHGRDGTDAY YQNMIQANPN NALLLGNYAK FLKEVRGDYP KAEQYLERAI LADPGDANVL SLYADLIWQT EKNADRAEGY FDQAIKSAPD
201: DCYVMASYAR FLWDVEEDED KDCQHKTDHG HAYPPDLFQE TKGSPHVTAA FQSYVSE

Best Arabidopsis Sequence Match ( AT1G80130.1 )
(BLAST)

001: MLLRSTSAPI LNSWLPQHCS RESSPEPESQ LWRRSTSLSL FSSKSIDGHT GEQLHQALSD NKEIIILKSK SNEHSYKTPT SSRQRRSSLD ETRYTKKTLD
101: RSSPFLVERL FSSSGQGDKA SSNDRLETLV SGGGGGMGGS GGNICNGGGG VGGSGVDGGR SEDATDTYYR EMIDSNPGNS LLTGNYAKFL KEVKGDMKKA
201: EEYCERAILG NTNDGNVLSL YADLILHNHQ DRQRAHSYYK QAVKMSPEDC YVQASYARFL WDVDEDEEDE ALGEEEENLS DETGHVPPTT MFRDFPQHTS
301: ITASS

Arabidopsis Description

F18B13.21 protein [Source:UniProtKB/TrEMBL;Acc:Q9SSC6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.