Factsheet for Bra008495.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

plastid 1
cytosol 1
nucleus 3
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY37568	Canola	nucleus	99.34	95.54
CDY41120	Canola	mitochondrion	95.36	93.81
Bra035194.1-P	Field mustard	nucleus	77.81	76.8
AT1G80130.1	Thale cress	nucleus	71.52	70.82
GSMUA_Achr2P15930_001	Banana	cytosol	19.87	50.0
KRH09728	Soybean	cytosol	16.89	45.13
KRH23575	Soybean	plastid	37.42	43.97
Bra020090.1-P	Field mustard	cytosol	27.81	43.3
Bra002280.1-P	Field mustard	plastid	37.75	40.14
PGSC0003DMT400073455	Potato	plastid	31.13	39.33
Solyc06g068130.2.1	Tomato	plastid	30.79	38.75
Bra006547.1-P	Field mustard	plastid	34.77	38.46
Bra011339.1-P	Field mustard	plastid	30.13	37.3
KRH47446	Soybean	plastid	37.75	36.19
KRH44461	Soybean	plastid	37.75	36.19
PGSC0003DMT400001660	Potato	mitochondrion, nucleus, plastid	38.08	35.94
Solyc03g116670.2.1	Tomato	nucleus	35.76	34.29
Bra013269.1-P	Field mustard	mitochondrion	24.17	31.88
Os06t0606700-00	Rice	plastid	29.14	31.65
Zm00001d046530_P001	Maize	plastid	31.13	31.65
HORVU7Hr1G090280.1	Barley	mitochondrion	29.8	31.25
TraesCS7D01G374500.1	Wheat	mitochondrion	28.15	30.04
TraesCS7A01G377700.1	Wheat	mitochondrion	28.48	29.97
TraesCS7B01G279400.1	Wheat	mitochondrion	28.81	29.69
EER88623	Sorghum	mitochondrion	30.46	28.75
Bra021028.1-P	Field mustard	plastid	22.85	26.24
Os04t0496700-00	Rice	nucleus	16.23	23.79
Os07t0542800-00	Rice	cytosol, mitochondrion, nucleus, plastid	15.23	18.7
Bra015324.1-P	Field mustard	nucleus	19.21	18.18
Bra018368.1-P	Field mustard	plastid	17.88	11.56
Bra018168.1-P	Field mustard	plastid	16.56	10.92
Bra039995.1-P	Field mustard	plastid	17.55	10.91
Bra015570.1-P	Field mustard	plastid	18.54	10.89
Bra031567.1-P	Field mustard	plastid	17.55	10.71
Bra019495.1-P	Field mustard	plastid	14.24	9.29

Protein Annotations

EnsemblPlants:Bra008495.1	EnsemblPlants:Bra008495.1-P	EnsemblPlantsGene:Bra008495	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR011990	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR26312	PANTHER:PTHR26312:SF75	SEG:seg
SUPFAM:SSF48452	UniParc:UPI0002546C58	UniProt:M4CW98	MapMan:35.2	:	:

Description

AT1G80130 (E=2e-091) | binding

Coordinates

chrA02:+:15967352..15968610

Molecular Weight (calculated)

33627.8 Da

IEP (calculated)

4.800

GRAVY (calculated)

-0.739

Length

302 amino acids

Sequence
(BLAST)

001: MLLRTTSAPI LNSWLQQHCS RESSPEPESL LQPRNRSLSL LASKSIDEHT GEMLHQAFSE HRETVLKSSY NEHDSSNVLP RRQRRSSLDE SSHGTAYNGK
101: ILDPSSTLLT ERLFSGSGLG EKVSDDEDHL EALVIGGAGG MGSSGVKICN GGDDSGSSGS EDATDVYYRE MINLTPGNSL LTGNYAKFLK EVRGDMKKAE
201: EYCERAILGN TNDGNVLSLY ADLILHNHGD RKRAHSYFQQ AAKMSPEDCY VQASYARFLW DVEDDEYEEE EEKEQLSDEI GHMPPTTIFR DFPKHARIST
301: TS

Best Arabidopsis Sequence Match ( AT1G80130.1 )
(BLAST)

001: MLLRSTSAPI LNSWLPQHCS RESSPEPESQ LWRRSTSLSL FSSKSIDGHT GEQLHQALSD NKEIIILKSK SNEHSYKTPT SSRQRRSSLD ETRYTKKTLD
101: RSSPFLVERL FSSSGQGDKA SSNDRLETLV SGGGGGMGGS GGNICNGGGG VGGSGVDGGR SEDATDTYYR EMIDSNPGNS LLTGNYAKFL KEVKGDMKKA
201: EEYCERAILG NTNDGNVLSL YADLILHNHQ DRQRAHSYYK QAVKMSPEDC YVQASYARFL WDVDEDEEDE ALGEEEENLS DETGHVPPTT MFRDFPQHTS
301: ITASS

Arabidopsis Description

F18B13.21 protein [Source:UniProtKB/TrEMBL;Acc:Q9SSC6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.