Factsheet for Bra011339.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
nucleus 3
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX75237	Canola	plastid	100.0	98.39
AT4G32340.1	Thale cress	mitochondrion	75.41	77.31
GSMUA_Achr2P15930_001	Banana	cytosol	23.77	48.33
Bra020090.1-P	Field mustard	cytosol	31.15	39.18
PGSC0003DMT400073455	Potato	plastid	35.66	36.4
Solyc06g068130.2.1	Tomato	plastid	34.02	34.58
Bra013269.1-P	Field mustard	mitochondrion	31.56	33.62
Bra002280.1-P	Field mustard	plastid	37.7	32.39
Os06t0606700-00	Rice	plastid	36.89	32.37
Bra006547.1-P	Field mustard	plastid	35.25	31.5
Solyc03g116670.2.1	Tomato	nucleus	40.57	31.43
Zm00001d046530_P001	Maize	plastid	38.11	31.31
Bra035194.1-P	Field mustard	nucleus	38.93	31.05
Bra008495.1-P	Field mustard	mitochondrion, nucleus	37.3	30.13
TraesCS7D01G374500.1	Wheat	mitochondrion	34.84	30.04
PGSC0003DMT400001660	Potato	mitochondrion, nucleus, plastid	39.34	30.0
EER88623	Sorghum	mitochondrion	38.93	29.69
TraesCS7A01G377700.1	Wheat	mitochondrion	34.84	29.62
HORVU7Hr1G090280.1	Barley	mitochondrion	34.84	29.51
TraesCS7B01G279400.1	Wheat	mitochondrion	34.84	29.01
Bra021028.1-P	Field mustard	plastid	27.87	25.86
Bra015324.1-P	Field mustard	nucleus	27.46	21.0
Os04t0496700-00	Rice	nucleus	17.62	20.87
Os07t0542800-00	Rice	cytosol, mitochondrion, nucleus, plastid	19.26	19.11
Bra018368.1-P	Field mustard	plastid	22.54	11.78
Bra039995.1-P	Field mustard	plastid	22.95	11.52
Bra018168.1-P	Field mustard	plastid	21.31	11.35
Bra031567.1-P	Field mustard	plastid	22.13	10.91
Bra015570.1-P	Field mustard	plastid	22.54	10.7
Bra019495.1-P	Field mustard	plastid	20.08	10.58

Protein Annotations

EnsemblPlants:Bra011339.1	EnsemblPlants:Bra011339.1-P	EnsemblPlantsGene:Bra011339	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR011990	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR26312	PANTHER:PTHR26312:SF73	SEG:seg
SUPFAM:SSF48452	UniParc:UPI000254643D	UniProt:M4D4D5	MapMan:35.2	:	:

Description

AT4G32340 (E=3e-068) | EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: binding (TAIR:AT1G80130.1); Has 2680 Blast hits to 1282 proteins in 184 species: Archae - 2; Bacteria - 433; Metazoa - 1247; Fungi - 71; Plants - 657; Viruses - 13; Other Eukaryotes - 257 (source: NCBI BLink).

Coordinates

chrA01:+:2660425..2661846

Molecular Weight (calculated)

26411.3 Da

IEP (calculated)

4.463

GRAVY (calculated)

-0.732

Length

244 amino acids

Sequence
(BLAST)

001: MILRSASSLD LNLRAAQKSP APRCTNGARV ATTARPVSAS LRGCKSMPRA SSDGNLHEMR AVQSRTKASS IYYDDAASSK VLERSMLHQG GSNGGFGDGG
101: AGGDGGGGGG GGSVDGYYEE MIQRYPGDAL LLANYARFLK EVKGDERKAE EYCERAMLSE DGRDGEMLSM YGDLIWKNHG DGARAQSYFD QAVQSSPDDC
201: HVLASYARFL WDTEEEEEEE EEGEEESKYE NGFSTYNPSV SVMS

Best Arabidopsis Sequence Match ( AT4G32340.1 )
(BLAST)

001: MIMRSASSLD LNLRAAQKPS VPRVVTTART VSAATPRVAK PITRASSDGN LYKIQSPESI TKTISVYHEE TASLRVLEGS RLPQGGSNGG FGGRGGDGAG
101: GGGGGGGGSV DGYYEEMIQR YPGDTLLLSN YARFLKEVKG DGRKAEEYCE RAMLSESGRD GELLSMYGDL IWKNHGDGVR AQSYYDQAVQ SSPDDCNVLA
201: SYARFLWDAE EEVEEEESKH HEDGFSDSTY NPSVSVVS

Arabidopsis Description

Tetratricopeptide repeat (TPR)-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:O49358]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.