Factsheet for Bra015324.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX89816	Canola	nucleus	90.6	99.31
AT1G04530.1	Thale cress	cytoskeleton, cytosol, nucleus	72.1	74.19
VIT_07s0005g04340.t01	Wine grape	cytosol, mitochondrion, nucleus	19.12	50.41
KRG95736	Soybean	cytosol, nucleus, plastid	22.57	33.8
HORVU5Hr1G031990.1	Barley	nucleus	10.66	28.81
GSMUA_Achr1P01000_001	Banana	plastid	24.45	28.78
Os04t0510600-01	Rice	plastid	24.76	28.52
Bra013269.1-P	Field mustard	mitochondrion	20.38	28.38
Bra011339.1-P	Field mustard	plastid	21.0	27.46
TraesCS2D01G363900.1	Wheat	mitochondrion, plastid	23.2	27.41
TraesCS2A01G367000.1	Wheat	plastid	22.88	27.04
Bra020090.1-P	Field mustard	cytosol	15.99	26.29
Zm00001d003035_P001	Maize	plastid	22.57	25.9
HORVU2Hr1G088520.1	Barley	cytosol, nucleus, plastid	22.57	24.16
Bra006547.1-P	Field mustard	plastid	20.38	23.81
GSMUA_Achr5P15660_001	Banana	plastid	21.63	23.79
TraesCS5A01G512000.1	Wheat	mitochondrion, plastid	22.57	22.93
Bra021028.1-P	Field mustard	plastid	18.81	22.81
EES12482	Sorghum	nucleus	23.51	22.73
KRH67454	Soybean	nucleus	25.39	22.69
TraesCS4B01G342900.1	Wheat	mitochondrion	21.94	22.22
Os03t0140700-01	Rice	plastid	23.2	21.83
EER92881	Sorghum	plastid	22.88	21.53
Bra002280.1-P	Field mustard	plastid	19.12	21.48
PGSC0003DMT400022129	Potato	plastid	22.88	20.28
Zm00001d027613_P002	Maize	plastid	22.57	20.22
Solyc09g064630.2.1	Tomato	plastid	22.26	19.89
HORVU4Hr1G084230.1	Barley	mitochondrion, plastid	20.69	19.35
Bra035194.1-P	Field mustard	nucleus	18.5	19.28
Bra008495.1-P	Field mustard	mitochondrion, nucleus	18.18	19.21
Bra018368.1-P	Field mustard	plastid	16.93	11.56
Bra039995.1-P	Field mustard	plastid	16.61	10.91
Bra031567.1-P	Field mustard	plastid	16.61	10.71
Bra018168.1-P	Field mustard	plastid	15.05	10.48
Bra015570.1-P	Field mustard	plastid	15.99	9.92
Bra019495.1-P	Field mustard	plastid	13.17	9.07

Protein Annotations

EnsemblPlants:Bra015324.1	EnsemblPlants:Bra015324.1-P	EnsemblPlantsGene:Bra015324	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR019734	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf
InterPro:TPR_repeat	PANTHER:PTHR26312	PANTHER:PTHR26312:SF89	PFAM:PF13181	PFscan:PS50293	SEG:seg
SMART:SM00028	SUPFAM:SSF48452	UniParc:UPI0002543EA2	UniProt:M4DFQ1	MapMan:35.2	:

Description

AT1G04530 (E=3e-097) | binding

Coordinates

chrA10:+:2475497..2476716

Molecular Weight (calculated)

35898.3 Da

IEP (calculated)

4.085

GRAVY (calculated)

-0.565

Length

319 amino acids

Sequence
(BLAST)

001: MLKSEPSLSI YCESGLNPED TATGTDENLD RTVSIGDSVE ADFSFAKHSS SSIDALSIKE EDEIERPPSP PMHLAAGLGI DKFDLYGGEI KFDLPSLDDE
101: RCGDYYKRML EEYPLHPLLL RNYANFLEYK GDFSGAEEYY HKCTVVEPSD GVALANYGRL VMKLHQDEAK ALSYFERAVQ ASPEDSNVLG AYASFLWEIN
201: DEDDDEVDDD AFGDRTRQGK EDFEPEAGEK RSSRLSETED GETLCRYAKA FWSINGDKEK ALFYFEKAVE ASPNDRYSYK YGISLTTQTL TENAIIIVFC
301: GGGSIILGEY ARFLWEIEE

Best Arabidopsis Sequence Match ( AT1G04530.1 )
(BLAST)

001: MLKSEASLSI YCDSGDGFKS EDPVTGIEEN LERTVTIGDA IDGGEFSFAK HKEEDSGEGE RGVFEEVIKK LGIGVRDELG FEIERPPSPP MHLAAGLGID
101: KFDLYGSEIK FDLPGYDDKN CGDYYKGMLE EYPLHPLLLK NYAKFLEYKG DLSGAEEYYH KCTVVEPSDG VALANYGRLV MKLHQDEAKA MSYFERAVQA
201: SPDDSIVLAA YASFLWEINA DDDDEDDDED DDESSGQGKD EFEADAAGKG KSSLSKTEDG ETLCRYAKAF WSINNDHEKA LFYFEKAVEA SPNDSIILGE
301: YARFLWEIDE

Arabidopsis Description

TPR4Tetratricopeptide repeat (TPR)-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q8VZ31]
SUBAcon: [cytoskeleton,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.