Factsheet for Bra018168.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX99068	Canola	plastid	99.56	99.56
AT3G47080.1	Thale cress	plastid	79.91	71.07
Bra019495.1-P	Field mustard	plastid	69.21	68.47
Bra018368.1-P	Field mustard	plastid	46.94	46.04
Bra039995.1-P	Field mustard	plastid	48.03	45.27
VIT_06s0004g06290.t01	Wine grape	plastid	51.97	44.99
KRH46437	Soybean	plastid	49.78	43.43
KRG98335	Soybean	plastid	50.0	43.05
Bra015570.1-P	Field mustard	plastid	48.03	42.8
Solyc06g076850.2.1	Tomato	plastid	50.87	42.29
Bra031567.1-P	Field mustard	plastid	45.41	42.02
PGSC0003DMT400078227	Potato	plastid	50.0	41.41
GSMUA_Achr8P02280_001	Banana	plastid	38.43	35.2
GSMUA_Achr9P03650_001	Banana	plastid	38.43	34.71
Os05t0447700-01	Rice	plastid	36.46	34.5
TraesCS3B01G400100.1	Wheat	plastid	36.03	34.45
TraesCS3D01G361500.1	Wheat	plastid	36.03	34.38
HORVU3Hr1G084970.2	Barley	plastid	35.81	33.95
TraesCS3A01G368600.1	Wheat	plastid	35.59	33.89
TraesCS1D01G277900.1	Wheat	plastid	34.72	33.54
GSMUA_Achr11P...	Banana	plastid	36.46	33.47
TraesCS1A01G278600.1	Wheat	plastid	34.28	33.4
TraesCS1B01G287500.1	Wheat	plastid	34.72	33.19
GSMUA_Achr6P33690_001	Banana	plastid	38.21	32.77
Zm00001d012325_P001	Maize	plastid	36.46	32.36
Os01t0855200-01	Rice	plastid	36.03	32.23
Zm00001d042812_P001	Maize	plastid	35.81	31.36
HORVU1Hr1G073460.2	Barley	plastid	34.72	31.05
KXG22120	Sorghum	plastid	34.5	30.98
Zm00001d010075_P001	Maize	plastid	35.15	30.67
Zm00001d038274_P002	Maize	plastid	33.19	30.28
EES01775	Sorghum	plastid	34.93	30.19
GSMUA_Achr5P28840_001	Banana	cytosol	34.5	28.16
Bra020090.1-P	Field mustard	cytosol	10.26	24.23
Bra011339.1-P	Field mustard	plastid	11.35	21.31
Bra002280.1-P	Field mustard	plastid	12.66	20.42
Bra013269.1-P	Field mustard	mitochondrion	9.83	19.65
Bra021028.1-P	Field mustard	plastid	11.14	19.39
Bra006547.1-P	Field mustard	plastid	11.14	18.68
Bra008495.1-P	Field mustard	mitochondrion, nucleus	10.92	16.56
Bra035194.1-P	Field mustard	nucleus	10.92	16.34
Bra015324.1-P	Field mustard	nucleus	10.48	15.05

Protein Annotations

EnsemblPlants:Bra018168.1	EnsemblPlants:Bra018168.1-P	EnsemblPlantsGene:Bra018168	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR011990	InterPro:IPR013026	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR26312
PANTHER:PTHR26312:SF87	PFscan:PS50293	SEG:seg	SUPFAM:SSF48452	UniParc:UPI000253F473	UniProt:M4DNT0
MapMan:35.2	:	:	:	:	:

Description

AT3G47080 (E=4e-102) | binding

Coordinates

chrA06:+:10763582..10765150

Molecular Weight (calculated)

51435.1 Da

IEP (calculated)

6.610

GRAVY (calculated)

-0.325

Length

458 amino acids

Sequence
(BLAST)

001: MDVKVATTTS FHWSGRHAAI PSLSQTLTSS KRRRSRGRGG GSLSSCQTRL KASAFLGTQS GKLHRSKSCE LLEFSTKSKL YPLRRVCSAS SGFFSDEEFS
101: AKMQELAIQF KIAGEEEDKV VVVGNDRRNH RFGNAKLLLH ESVPGLASLE APWMEMVSHS SIERKANRVD LPLSLRMIKR KLQEEALREA RESTYCSIDK
201: AFSSLVFMIE EMHSFALQTR EGVVQQVKKD MHASLLWMFQ RVFSQTPTLM VYVMILLANF TVHSVASNLA IAESPPGSAG TKEDSVLGQG IREEELSLWN
301: SMVEEADQMQ GSPVDRDMRL RLVSPIIARV ALDDNANYTR TELFYKIGLA QEPNNPLLLA NYAQFLYLVS QDYDRAEKCF KKAIESGEAD AEAYSKYAIF
401: QWKVRKDLWA AEENFLEAIS ADPTNSFYAA SYANFLWQTG GEETCFPLES SDSPQEIA

Best Arabidopsis Sequence Match ( AT3G47080.1 )
(BLAST)

001: MEVKVATTTS FHWSGRHTAI PQCPSFSQTL TSSKRRRSRG IAGDVSVGGG SLRLKPSTFL GTQSGKLHRS KSCELWQFSN STTKKIRTDV KKKHNPLRRV
101: CSASSGFFSS DEAFSVKMQE LASQFRNAGD EEEEENKQKS EAVDNDNDSN NHRFGSLKLL QESVPGLASL EAPWAEMVNH SSIERKANSV DLPLSLRIIK
201: RKLQEEALKK ASATTYCSIN RAFSSMVFMI EELHSFALQT RVGVLKQVKK EMHASLLWIF QRVFSQTPTL MVYVMILLAN YTVHSVASNL PIAASPPVVN
301: KGPDQTQQRI DFSSLKESTK LDGSKWLGSI NFDKVSHLPR HRDSVSGEGM REEEVSLWNS MVEEADQMQD SSVDRDMRLR LVSPITARIE LDDYANYTRT
401: ELLYKIGLAQ EPDNHLLLAN YAQFLYLVTQ DHERAENCFK KAIESEDVDA ETYSKYAIFL WKVRNDLWAA EENFLEAISA DPTNSFYAAN YANFLWNTGG
501: EETCFPLEDS TQEMV

Arabidopsis Description

Tetratricopeptide repeat (TPR)-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9SD65]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.