Factsheet for TraesCS1A01G278600.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G277900.1	Wheat	plastid	94.68	93.88
TraesCS1B01G287500.1	Wheat	plastid	93.4	91.65
HORVU1Hr1G073460.2	Barley	plastid	87.66	80.47
Os05t0447700-01	Rice	plastid	78.3	76.03
Zm00001d038274_P002	Maize	plastid	70.64	66.14
KXG22120	Sorghum	plastid	71.7	66.08
Zm00001d010075_P001	Maize	plastid	67.66	60.57
TraesCS3A01G368600.1	Wheat	plastid	61.28	59.88
CDY02002	Canola	cytosol, mitochondrion, nucleus	17.45	53.95
GSMUA_Achr9P03650_001	Banana	plastid	47.45	43.98
GSMUA_Achr8P02280_001	Banana	plastid	46.17	43.4
GSMUA_Achr11P...	Banana	plastid	44.47	41.88
GSMUA_Achr6P33690_001	Banana	plastid	47.45	41.76
VIT_06s0004g06290.t01	Wine grape	plastid	45.11	40.08
CDY51354	Canola	plastid	41.06	40.04
CDX97868	Canola	plastid	42.55	39.84
Bra018368.1-P	Field mustard	plastid	39.57	39.83
Bra039995.1-P	Field mustard	plastid	41.06	39.71
KRG98335	Soybean	plastid	44.47	39.29
KRH46437	Soybean	plastid	43.19	38.67
AT2G29670.2	Thale cress	plastid	43.62	38.25
Solyc06g076850.2.1	Tomato	plastid	43.83	37.39
Bra015570.1-P	Field mustard	plastid	40.85	37.35
CDY06694	Canola	plastid	40.64	37.16
PGSC0003DMT400078227	Potato	plastid	43.62	37.07
CDY06247	Canola	plastid	38.94	36.97
Bra031567.1-P	Field mustard	plastid	38.94	36.97
CDY10264	Canola	plastid	40.64	36.94
CDY09927	Canola	plastid	37.66	35.76
AT1G07280.1	Thale cress	plastid	41.28	35.14
CDX99068	Canola	plastid	33.4	34.28
Bra018168.1-P	Field mustard	plastid	33.4	34.28
GSMUA_Achr5P28840_001	Banana	cytosol	40.21	33.69
CDX86126	Canola	plastid	34.47	33.33
Bra019495.1-P	Field mustard	plastid	31.91	32.4
AT3G47080.1	Thale cress	plastid	35.11	32.04
CDY58299	Canola	plastid	32.55	31.55
CDY38075	Canola	plastid	28.3	31.37
TraesCS1A01G172600.1	Wheat	plastid	17.45	23.84
TraesCS1A01G194200.1	Wheat	plastid	11.28	22.46
TraesCS2A01G367000.1	Wheat	plastid	12.77	22.22
TraesCS5A01G512000.1	Wheat	mitochondrion, plastid	14.68	21.97
TraesCS7A01G377700.1	Wheat	mitochondrion	13.19	21.6

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.2	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0006139
GO:GO:0006396	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	InterPro:HAT	InterPro:IPR011990
InterPro:IPR013026	PFAM:PF14559	PFscan:PS50293	PANTHER:PTHR26312	PANTHER:PTHR26312:SF83	SMART:SM00386
SUPFAM:SSF48452	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	EnsemblPlantsGene:TraesCS1A01G278600	EnsemblPlants:TraesCS1A01G278600.1	SEG:seg

Description

No Description!

Coordinates

chr1A:-:474291504..474293580

Molecular Weight (calculated)

50260.0 Da

IEP (calculated)

5.112

GRAVY (calculated)

-0.235

Length

470 amino acids

Sequence
(BLAST)

001: MGFQVAAVVP SPCAPSTSSR SPFLGGRLMR SWAPGGLVSR RRGEGRPAGA RCALSASIDG VGGGDMEFLR RIEELAASAG VRTAGCGWPP SLERSASGVG
101: LPLSLRMLKR KKQQRRQQQV PQPSRWDGRL RLGSAGESVG RAFSSMVLIV RELQSFALQQ MLCDDLQAVL ARAHGEMQDS FVWLFQHIFA GTPALMLSLM
201: LLLANFTVHS MSNSVAAAAA AAAVVDAQHT EPSNPRFDAA SVKTFSAGRT ASVGGGSGSG GDVRPVAGAS GDDRWDESRY SLSRVAPQQL TPLAGTGAEN
301: VVPDAGAVDE QAIWEKMVAE ASSMQADARA DELTDPGVLG NLVAPVEAEI ETEDAGGEYA RTEQRYELAV SEEPNNSLIL ANFAQFLYIT RKDHKRAEHY
401: FERAVRAEPA DAEALSRYAT FLWRARDDAE AAEETFQQAI AADPGNAHYA AAYAHFLWNT GGEDTCFPLD

Best Arabidopsis Sequence Match ( AT1G07280.1 )
(BLAST)

001: MGVKVATSST FHQWVAHPIV HHSSSLSQTL ASSAVSSPSR RRIIGNDGRS SLSCRSVMQS QRLNPSSPFG TSSTNLRHSK SCELWESTKR PKTQLIRRAF
101: SANVDPFSEE EFAKKMQELT LKFQVSNEEE DNESDTRIDD YTRKMDIVGS HNNFRSDSME PPWPEMVQMS NIERKANSVD LPLSLRIIKR KLQMEEGVLN
201: QVGESACCSV KKAFSSMVFM IRELQSFTLH MRELLLFEDL QGILHRVRKE MQASFVWLFQ QVFSATPTLM VSVMILLANF TVYSIESNSA LAAAVSPPTT
301: LSFSFETTAE ISETQETNQK FDSSMVKTFS VSSPYGKTSF VGGGGGNNIP PPVQSGTDGD GSDQFRKSQF SSSSLGATSA DSDVSVSGQE EIRLWNSILE
401: ETAKMETLDH ETMKGMVSPV EARLEAEESM DYFKTELLYQ TGLSQEPGNV LLLANYAQFL YLIIHDYDRA EKYFKRAAKA EPADAEALNK YATFLWRARN
501: DIWRAEETYL EAISADPTNS VYSANYAHFL WNTGGDETCF PLDAPSQQNN TT

Arabidopsis Description

At1g07280/F22G5_32 [Source:UniProtKB/TrEMBL;Acc:Q8VZC8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.