CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY06247	Canola	plastid	94.95	94.95
CDY06694	Canola	plastid	75.96	73.15
CDY10264	Canola	plastid	75.96	72.73
CDY02002	Canola	cytosol, mitochondrion, nucleus	21.41	69.74
AT1G07280.1	Thale cress	plastid	77.58	69.57
CDX97868	Canola	plastid	57.58	56.77
CDY51354	Canola	plastid	55.15	56.64
VIT_06s0004g06290.t01	Wine grape	plastid	53.54	50.09
KRH46437	Soybean	plastid	51.52	48.57
KRG98335	Soybean	plastid	51.72	48.12
PGSC0003DMT400078227	Potato	plastid	51.92	46.47
Solyc06g076850.2.1	Tomato	plastid	51.72	46.46
CDX99068	Canola	plastid	42.02	45.41
CDX86126	Canola	plastid	43.23	44.03
GSMUA_Achr8P02280_001	Banana	plastid	42.02	41.6
CDY58299	Canola	plastid	40.4	41.24
GSMUA_Achr9P03650_001	Banana	plastid	41.62	40.63
TraesCS3D01G361500.1	Wheat	plastid	39.39	40.62
TraesCS3A01G368600.1	Wheat	plastid	39.39	40.54
TraesCS3B01G400100.1	Wheat	plastid	39.19	40.5
Os01t0855200-01	Rice	plastid	41.82	40.43
CDY38075	Canola	plastid	34.34	40.09
HORVU3Hr1G084970.2	Barley	plastid	38.79	39.75
GSMUA_Achr11P...	Banana	plastid	39.39	39.08
GSMUA_Achr6P33690_001	Banana	plastid	42.02	38.95
Zm00001d012325_P001	Maize	plastid	39.8	38.18
Os05t0447700-01	Rice	plastid	37.17	38.02
TraesCS1B01G287500.1	Wheat	plastid	36.77	38.0
Zm00001d042812_P001	Maize	plastid	40.0	37.86
EES01775	Sorghum	plastid	40.4	37.74
TraesCS1A01G278600.1	Wheat	plastid	35.76	37.66
TraesCS1D01G277900.1	Wheat	plastid	35.76	37.34
KXG22120	Sorghum	plastid	37.58	36.47
HORVU1Hr1G073460.2	Barley	plastid	36.77	35.55
Zm00001d038274_P002	Maize	plastid	35.96	35.46
Zm00001d010075_P001	Maize	plastid	36.77	34.67
GSMUA_Achr5P28840_001	Banana	cytosol	39.19	34.58
CDX78813	Canola	mitochondrion	11.11	24.02
CDX76550	Canola	plastid	12.32	23.19
CDY08881	Canola	plastid	12.12	23.08
CDX75237	Canola	plastid	11.31	22.58
CDY45101	Canola	plastid	12.73	22.26
CDX68837	Canola	mitochondrion, plastid	11.11	22.0
CDY44501	Canola	mitochondrion	10.71	21.81
CDY60380	Canola	plastid	11.72	21.64
CDX88849	Canola	plastid	11.72	21.56
CDX92483	Canola	plastid	12.12	21.43
CDX87295	Canola	nucleus	10.71	20.95
CDY35827	Canola	plastid	12.12	20.62
CDY59180	Canola	cytosol	7.27	20.34
CDY39992	Canola	nucleus	11.31	18.3
CDX89816	Canola	nucleus	10.51	17.87
CDY18241	Canola	nucleus	10.1	17.24
CDY37568	Canola	nucleus	10.91	17.2
CDY41120	Canola	mitochondrion	10.51	16.94

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.2	UniProt:A0A078FA47	EnsemblPlants:CDY09927	ProteinID:CDY09927	ProteinID:CDY09927.1
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00031694001	InterPro:IPR011990	InterPro:IPR013026
PFscan:PS50293	PANTHER:PTHR26312	PANTHER:PTHR26312:SF83	SUPFAM:SSF48452	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf
UniParc:UPI0004EB6342	SEG:seg	:	:	:	:

Description

BnaC08g45240DBnaC08g45240D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FA47]

Coordinates

chrLK032000:-:110396..113631

Molecular Weight (calculated)

55740.7 Da

IEP (calculated)

4.887

GRAVY (calculated)

-0.370

Length

495 amino acids

Sequence
(BLAST)

001: MGMKIATTST LHQCVAHHSS SLSQTLSSST VSSLSKRRSI GNNGRSLSCE LWESSRHTKT HLLPRAFITS VDPFSEEEFS KKMQELSLKF QVSNEEDSDI
101: FGSHDFTVMD TMKPPWHETV QMSTIERKAN SVELPLSLRI IKRKLKMEEE EEVIKQVGES SAMNRAFSSM VFMIRELQSF TLHMRELLLF EDLQGVLLRV
201: RKEMHASFVW LFQQVFSTTP TLMVSVMILL ANFTVYSIGT NSALAAVSLS FDTTETNAGL DKGTYSATTH NPLFFNKPHE KLDSSVIKTF SVSSPTGGGS
301: GGNNIPTVQS GTDGDGSDKF RMLPQFSTSD SDVSVSGQEE IKLWNSIWEE SEKMETLDHE TMKQMVSPVE ARVEAEESMD YFKTELLYQT GLSQQPDNVL
401: LLTNYAQFLY LIIHDYDRAE KYFKRAAEAE PTDAEALNKY ATFLWKARND IGRAEETFLE AISADPTNSF YSANYAHFLW NTGGDETCFP LDPPP

Best Arabidopsis Sequence Match ( AT1G07280.2 )
(BLAST)

001: MGVKVATSST FHQWVAHPIV HHSSSLSQTL ASSAVSSPSR RRIIGNDGRS SLSCRSVMQS QRLNPSSPFG TSSTNLRHSK SCELWESTKR PKTQLIRRAF
101: SANVDPFSEE EFAKKMQELT LKFQVSNEEE DNESDTRIDD YTRKMDIVGS HNNFRSDSME PPWPEMVQMS NIERKANSVD LPLSLRIIKR KLQMEEGVLN
201: QVGESACCSV KKAFSSMVFM IRELQSFTLH MRELLLFEDL QGILHRVRKE MQASFVWLFQ QVFSATPTLM VSVMILLANF TVYSIESNSA LAAAVSPPTT
301: LSFSFETTAE ISETQETNQK FDSSMVKTFS VSSPYGKTSF VGGGGGNNIP PPVQSGTDGD GSDQFRKSQF SSSSLGATSA DSDVSVSGQE EIRLWNSILE
401: ETAKMETLDH ETMKGMVSPV EARLEAEESM DYFKTELLYQ TGLSQEPGNV LLLANYAQFL YLIIHDYDRA EKYFKRAAKA EPADAEALNK YATFLWRARN
501: DIWRAEETYL EAISADPTNS VYSANYAHFL WNTGGDETCF PLDAPSQQNN TT

Arabidopsis Description

At1g07280/F22G5_32 [Source:UniProtKB/TrEMBL;Acc:Q8VZC8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.